1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgaggattggatatttaaggctacgactgttttttaattattattttttcgaatttattcttcgttaggcatctaggaatctacactgtataactactagacataaatgtgcaatcgggaatgggcggatgcagCCTCCTTTTACGCAAAAAAACAAGCAGAAGCTGCAGCAGAAGGTCATCAAAGACAAAATCAAGTTACCAACATACTTGACTGCGGATGCAAACAACCTCC
species | Physcomitrella patens |
transcript | PP1S129_113V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTTTATGAGATGCTCACTGTTCAG -CTCCTTTTACGCNNNNNNNCAAGCAGAAGCTGCAGCAGAAGGTCATCAAAEST: gi|208356045|gb|DC957289.1|DC957289
genomic: ACTTTATGAGATGCTCACTGGTCAGgtgaggattg ... gcggatgcagCCTCCTTTTACGCAAAAAAACAAGCAGAAGCTGCAGCAGAAGGTCATCAAA
EST: CTGATTGGTGGAGTGTCGGCATCCTACTTTATGAGATGCTCACTGGTCAG CCTCCTTTTACGCNNNNNNNCAAGCAGAAGCTGCAGCAGAAGGTCATCAAAEST: gi|162164767|gb|FC340489.1|FC340489
genomic: CTGATTGGTGGAGTGTCGGCATCCTACTTTATGAGATGCTCACTGGTCAGgtgaggattg ... gcggatgcagCCTCCTTTTACGCAAAAAAACAAGCAGAAGCTGCAGCAGAAGGTCATCAAA
EST: CTGATTGGTGGAGTGTCGGCATCCTACTTTATGAGATGCTCACTGGTCAG CCTCCTTTTACGC
genomic: CTGATTGGTGGAGTGTCGGCATCCTACTTTATGAGATGCTCACTGGTCAGgtgaggattg ... gcggatgcagCCTCCTTTTACGC
tctacactgtataactactagacataaatgtgcaatcgggaatgggcggatgcagCCTCCTTTTACGCAAAAAAACAAGCAGAAGCTGCAGCAGAAGGTCATCAAAGACAAAATCAAGTTACCAACATACTTGACTGCGGATGCAAACAACCTCC
gtataac putative branch site (score: 6)
tataacta TA-rich tract