Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC

Basic information

species Physcomitrella patens
transcript PP1S127_74V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC
                  ||  ||   ||    |  |  |||   |  || || ||| |   |  | |   |  |   | |   | |    | || | |   | |    ||||| ||||| |||||||| |||||||| ||||| ||||| || |||||||| ||||| ||||||||||| ||||||||  | || ||| | || || || ||    |
------------------gtttgtacataaaatccatc-cgtttgaataaaatgttgctgtctccttgtgatagcttgaatttttttct--tagaagctgcttct----tgttttcagGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC

upper sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: LOC_Os03g38000.2 (Oryza sativa), 3'ss of exon 3
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgttt-acagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC
                                  | ||| || | |   |   || |  |  || |       | |    |   | ||       | | |  ||   ||| |||  ||||| || || ||||| |||||||||||||||||||||||||| || ||||| |||   || || |  || || || || ||| | || || || ||    |
-------------------------------gtttgtttggttcaactcaagcatcg--tagtatttaaaaacctcatgatctttttggctcaacgcacttgttcattatcttttgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTCGACTGGGACCCCAAGGGCAAGGTTGGCCCGACCACCCCTCTGCCGGATCTTGTAACCATCCATGCTC

upper sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC
           | ||| ||   |  |  || |  | | |  |  |  ||| ||||      ||||  | |        ||| |  ||  |||            ||   ||  | ||||| ||||| || || ||||| ||||| ||||| ||||||||||||||||| |||||||| || |  |  ||  | || ||| | || || |||||| |||
-----------gtttggtgcttggtatcagatgttatcttattatgcaaacatataacaaaatagctgtt--------agtaatactctagt------------tgacttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC

upper sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G099352_T01 (Zea mays), 3'ss of exon 3
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggatta-ctttggtatgtt-tacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC
          || ||| |||       |   |  ||  ||||     ||    |  || |      || | | | ||   |  |  | || |     | || |||   | |||    ||||| || || ||||| ||||||||||||||||| |||||||| || ||||| |||   || || || ||||| ||||| ||  | ||||| || ||||  |
-------gtttgtttgctgtaatctcctcaatgtttggtcgtctctcaagagcagggacta-----cgttttccacgtgcttcaatttaattacccaactaacttcaatctgtcgcgcagGGTGTTCTTGGCATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACTCCTCTTCCGGACCTGGTGACCATCCACACCC

upper sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 3
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC
||               || ||||  |||    || |||    || |  |   | |   | ||  |||  |||||  | || | |    |    |    |  ||  ||     | ||||| || ||||| || ||||||||||||||||| |||||||| || ||||| |||   || || || || || ||||| ||  | ||||| || || |  |
gtttgttttgctacaattgcccgtt-gtaatgtctgtttgtctctgggtaagcact---tcattttcgacgttccaaatgtaatttctcaacaaacatctttttctgt---cgtgcagGGTGTTCTGGGTATCAAGGTGAAGATCATGCTTGACTGGGACCCGAAGGGCAAGGTTGGCCCGATCACCCCTCTTCCGGACCTGGTGACCATCCATACCC

upper sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GLYMA10G26790.1 (Glycine max), 3'ss of exon 5
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttccc--gaagtgaatctgaagtggaggattactttggtatgt-ttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC
          |  ||| | ||  |   | |    || ||  |||||   |  | ||  | | | || | | || |   |||||||   ||| |   |   ||| |||    ||  | | |||| || || ||||||||||||||||||||||| || |||||||| |||||||| || || || |  ||||| || || ||| | || || || ||    |
---------gtttttgct-tctattctttgtagattcttgatactatttatctcttt-tgggttgttgattttactatgaagtga---tgatgctaattgttattttttgctgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATTCTC

upper sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GLYMA10G26890.1 (Glycine max), 3'ss of exon 5
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtat--gtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC
          |  ||    ||  |   | |    || ||  |||||   |  | ||  | | | || | | || |  | |  ||  ||| |   |    || |||| |      | | |||| || || ||||||||||||||||||||||| || |||||||| |||||||| || || || |  ||||| || || ||| | || || || ||    |
-------gtttttttatcttctattctttgtagattcttgatactatttatctcttt-tgggttgttgattttact-atgaaaagatgatgctaattggtattttgttgctgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATTCTC

upper sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GLYMA20G21190.1 (Glycine max), 3'ss of exon 5
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtacta---gaaagatattgattgatagtcggtgttcc----cgaagtgaatctgaagtggaggattactttggtatg--tttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC
        | |  ||    ||  |   |    | || ||  |||||      |  | | | ||| |  |   | ||      ||| |   |  ||| |   |   ||| |||| |      | | |||| || || ||||||||||||||||||||||| || |||||||| |||||||| || || || |  ||||| || || ||| | || || || ||    |
--------gttattttgcttctattcttcatacattcttgatactatttatcatttttgggttgttgattcattttgttttacgatgaagagatgatgctaattgttattttgttgctgcctcatagGGTGTTCTTGGCATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAGGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATCTTGTCACAATCCATTCTC

upper sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: AT5G35530.1 (Arabidopsis thaliana), 3'ss of exon 5
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctga--agtggaggattactttggtatgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC
                             |    || |||  | | ||||  | ||  ||||    |  | | ||    | ||   ||   |         |  ||    |  | | ||||| ||||| ||  | ||||||||||||||||| |||||||| || ||||| || |||||||| ||||| ||| | || ||||| ||||  || || |  |
-----------------------------gtcagttcttcacagtggaaacctgtttcttgaatcacattctacctagtgagatcttgtgtaacctgaatctggttaatcacatgtgcagGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCAAACAAGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACAC

upper sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatg-tttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC
|||||    ||  | |    | |    | | |   || |  ||   |  | || ||||||  |  ||  | |    |   ||||||     ||     || ||||  |||| | || ||||||| || || || ||||| ||||||||||||||||||||||| ||||| ||||| || ||||  |||||| | || ||| | |||||||||||||  |
gtacatgctataat-gtctcctggttttggttgaattgt--tagctgccacatcttgatt--tcatcattttatttgt--tgaatcccggctgatt--ttccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC

upper sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv09s0002g01460.t01 (Vitis vinifera), 3'ss of exon 5
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC
              |  | |      ||  ||    |    |  |   ||  | ||  |||    |   |   | |    |  |  |    | | | | |   |||| |      ||||| ||  |||| || ||||||||||||||||| ||||||||||| ||||| ||||| || || |  || || || || ||| | || || || ||||  |
----------aatctcctattgcatggttccttacctgctttgatttcaatgttttagttgtctattacttcccaccttttttactttt--ttgtgaacttaattggca------cagGGTGTTTTGGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGCAAGCAGGGCCCTAAAACACCTCTACCTGATCTTGTCACCATCCACACCC

upper sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv11s0016g01380.t01 (Vitis vinifera), 3'ss of exon 5
--gtacacaagatgcttgat--gtccgtcagtagctccttttt----cgtactaga--aagatattgattgata-gtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgttt--------acagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC
   | |   |    |    |   || ||   |   || ||||     | | ||  |  |      || || ||| |   |  | ||   | || |  ||           |  | |||  || ||        |||||| || || || || ||||| ||||||||||| || |||||||| ||||| |||||||| ||||  || || || || ||| | || || || ||||  |
gtttgcttcactcacccagttgatctgttcatgcttctttttgttaacatcctcaaccattgcggtggttcatacggttgcttaccttcattgcaattgtgtcctgatcatgttctggattgcttgccatcaaacagGGTGTACTTGGTATCAAGGTCAAGATCATGCTTGATTGGGATCCCAAGGGAAAGCAAGGCCCCAAAACGCCTCTCCCTGATCTTGTCACCATCCACACTC

upper sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ31038 (Selaginella moellendorffii), 3'ss of exon 5
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC
                                                       ||   || | ||| |  |   ||  || |||   |||     |  | |    | || |  ||||| ||  |||| || ||||||||||||||||| ||||||||||||||||| |||   || ||   ||| || || || ||  | ||||| || ||  | |
------------------------------------------------------gtgcaaga-actcgatcgttttgatttggatcc--agtttctaagcattggattgtgctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC
                                        |||| ||||    ||   ||         || |   ||      |   |||    |||||    |||     |  ||||| ||  |||| || ||||||||||||||||| ||||||||||||||||| |||   || ||   ||| || || || ||  | ||||| || ||  | |
----------------------------------------gtacaagaactcgatcattt---------tgatttggatccagtttctaagcattggattgtgctggc----tggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ34676 (Selaginella moellendorffii), 3'ss of exon 5
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC
                                                       ||   || | ||| |  |   ||  || |||   |||     |  | |    | |  |  ||||| ||  |||| || ||||||||||||||||| ||||||||||||||||| |||   || ||   ||| || || || ||  | ||||| || ||  | |
------------------------------------------------------gtgcaaga-actcgatcgttttgatttggatcc--agtttctaagcattggattgttctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208397377|gb|DC916331.1|DC916331
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208366353|gb|DC947563.1|DC947563
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|162201214|gb|FC378449.1|FC378449
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|162269608|gb|FC445567.1|FC445567
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|37837350|gb|BJ595358.1|BJ595358
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208345907|gb|DC901792.1|DC901792
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|37840022|gb|BJ598030.1|BJ598030
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208390380|gb|DC933425.1|DC933425
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208371960|gb|DC951937.1|DC951937
EST:     ACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: ACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208392807|gb|DC953704.1|DC953704
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|67719364|gb|BJ969623.1|BJ969623
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAANGTGAANATCATGCTCNACTG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTG
EST: gi|67710084|gb|BJ965848.1|BJ965848
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTG
EST: gi|162250491|gb|FC428394.1|FC428394
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208369055|gb|DC931301.1|DC931301
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAANGTGAANATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208390220|gb|DC949488.1|DC949488
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|100396698|gb|BY953782.1|BY953782
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|37833211|gb|BJ591223.1|BJ591223
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|67726750|gb|BJ977009.1|BJ977009
EST:     CTGTCAACGGTTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|162228424|gb|FC405244.1|FC405244
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208389753|gb|DC938315.1|DC938315
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|67720656|gb|BJ970915.1|BJ970915
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCATCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|37822438|gb|BJ580504.1|BJ580504
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208389554|gb|DC945806.1|DC945806
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|15729243|gb|BI741216.1|BI741216
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GTCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|37823338|gb|BJ581404.1|BJ581404
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208359816|gb|DC938921.1|DC938921
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|37849560|gb|BJ607568.1|BJ607568
EST:     CGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208368268|gb|DC951520.1|DC951520
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGGCTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|67724111|gb|BJ974370.1|BJ974370
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGATCTGGGATCCAAAGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGA-CTGGGATCCAAAGGG
EST: gi|208360035|gb|DC934924.1|DC934924
EST:     CTGTCAACGGTTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|67716966|gb|BJ967225.1|BJ967225
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGG
EST: gi|208354216|gb|DC902458.1|DC902458
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|162250490|gb|FC428393.1|FC428393
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208393922|gb|DC938477.1|DC938477
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAANATCATGCTCGGCTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|162269609|gb|FC445568.1|FC445568
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208365722|gb|DC935791.1|DC935791
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208347898|gb|DC917605.1|DC917605
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208370047|gb|DC948128.1|DC948128
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208357230|gb|DC942780.1|DC942780
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATC
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATC
EST: gi|18338708|gb|BJ170732.1|BJ170732
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|37850730|gb|BJ608738.1|BJ608738
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|67727659|gb|BJ977918.1|BJ977918
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208392206|gb|DC949596.1|DC949596
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|67718572|gb|BJ968831.1|BJ968831
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|162178849|gb|FC354781.1|FC354781
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208394797|gb|DC915618.1|DC915618
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208393333|gb|DC904007.1|DC904007
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208384056|gb|DC919612.1|DC919612
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208351580|gb|DC905729.1|DC905729
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|100385509|gb|BY969846.1|BY969846
EST:     TGTCAACGATTACATCGACAGTGGCGTCCAACACGTTATTGTTGCGTCAG                         GGCCTGCCTGGGCATTAAGG
genomic: TGTCAACGATTACATCGACAGTGCCGTCCGACACGTTAT-GTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGC-TGGGCATTAAGG
EST: gi|208379651|gb|DC903706.1|DC903706
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|67718261|gb|BJ968520.1|BJ968520
EST:     CTGTCAACGGTTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|162201213|gb|FC378448.1|FC378448
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|37836801|gb|BJ594809.1|BJ594809
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208364553|gb|DC930943.1|DC930943
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGGATCCAAAGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGG-ATCCAAAGGG
EST: gi|208366877|gb|DC951364.1|DC951364
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|162278152|gb|FC454387.1|FC454387
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208371435|gb|DC955771.1|DC955771
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208374394|gb|DC940695.1|DC940695
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208387160|gb|DC945459.1|DC945459
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|18335712|gb|BJ167733.1|BJ167733
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208392633|gb|DC933991.1|DC933991
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208368343|gb|DC935684.1|DC935684
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|67727005|gb|BJ977264.1|BJ977264
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|208386141|gb|DC949052.1|DC949052
EST:     CTGTCAACGGTTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
EST: gi|67725485|gb|BJ975744.1|BJ975744
EST:     CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAG                         GGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG
genomic: CTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 30

TGCTAAGTCCATGAAGTTCAAGGATGGTTACATGATCTCATCTGGGAGCCCTGTCAACGATTACATCGACAGTGCCGTCCGACACGTTATGTTGCGTCAGgtacacaaga ... atgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC
                                  attacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatgtttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG