1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gttagcgagctggtctgcatgcgacagtaatatattaggaaacatatcctacaaaattctgtcacagttactggtatatgaatacttggaatgaaactcaccttctcagtgtataggagcactatccggatacatatgtaactcgatcaagtctttcattaatgaaggaatgtctgtcttgtgtgcggtgtagCTTTCTTGGAGCAGATGCAAAAAGGAGGGGATCTCAACCTCATAGGTCAATTTGGAGTTGGTTTCTACTCTGTGTATTTGGTTGCTGATCACGTTGAAGT
species | Physcomitrella patens |
transcript | PP1S126_38V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAATGATCTTATCAAGAATCTTGGTACCATCGCCAAGTCGGGCACATCAG CTTTCTTGGAGEST: gi|100406123|gb|BY991551.1|BY991551
genomic: GAATGATCTTATCAAGAATCTTGGTACCATCGCCAAGTCGGGCACATCAGgttagcgagc ... tgcggtgtagCTTTCTTGGAG
EST: GAATGATCTTATCAAGAATCTTGGTACCATCGCTAAGTCGGGCACATCAG CTTTCTTGGAGCAGATGCAAAAAGGAGGGGATCTCAACCTCATAGGTCAATEST: gi|67719606|gb|BJ969865.1|BJ969865
genomic: GAATGATCTTATCAAGAATCTTGGTACCATCGCCAAGTCGGGCACATCAGgttagcgagc ... tgcggtgtagCTTTCTTGGAGCAGATGCAAAAAGGAGGGGATCTCAACCTCATAGGTCAAT
EST: GAATGATCTTATCAAGAATCTTGGTACCATCGCCAAGTCGGGCACATCAG CTTTCTTGGAGCAGAT
genomic: GAATGATCTTATCAAGAATCTTGGTACCATCGCCAAGTCGGGCACATCAGgttagcgagc ... tgcggtgtagCTTTCTTGGAGCAGAT
taactcgatcaagtctttcattaatgaaggaatgtctgtcttgtgtgcggtgtagCTTTCTTGGAGCAGATGCAAAAAGGAGGGGATCTCAACCTCATAGGTCAATTTGGAGTTGGTTTCTACTCTGTGTATTTGGTTGCTGATCACGTTGAAGT
cattaat putative branch site (score: 6)
tttcattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcgagctggtctgcatgcgacagtaatatattaggaaacatatcctacaaaattctgtcacagttactggtatatgaatacttggaatgaaactcaccttctcagtgtataggagcactatccggatacatatgtaactcgatcaagtctttcattaatgaaggaatgtctgtcttgtgtgcggtgtagCTTTCTTGGAGCAGATGCAAAAAGGAGGGGATCTCAACCTCATAGGTCAATTTGGAGTTGGTTTCTACTCTGTGTATTTGGTTGCTGATCACGTTGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG