1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtattttatgtgtgcgaaccctatttccatgatatttttaaatggcaatgttattctgcctgtgcatggatatggaccgatgggttgtgtttgtagtgatacattgttaacgttgccctttgttttcgaggtacgtttctcagCCGACGAGCTCTCGTTTGCAGGGGTCTGATACCTCTCTTGGCCGAAGGCTCAGCAAAGGCTACTGATTCGGAATCAACAGATGATATTTTGAATGATGCA
species | Physcomitrella patens |
transcript | PP1S124_70V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCTGGACTTGCAGCGAGGAATCTCCTGCTCATCACAGCTTGGTCGTCAG CCGACGAGCTCTCGTTTGCAGGGGTCTGATACCTCTCTTGGCCGAAGGCTCEST: gi|37822642|gb|BJ580708.1|BJ580708
genomic: ACCTGGACTTGCAGCGAGGAATCTCCTGCTCATCACAGCTTGGTCGTCAGgtattttatg ... cgtttctcagCCGACGAGCTCTCGTTTGCAGGGGTCTGATACCTCTCTTGGCCGAAGGCTC
EST: ACCTGGACTTGCAGCGAGGAATCTCCTGCTCATCACAGCTTGGTCGTCAG CCGACGAGCTCTCGTTTGCAGGGGTCTGATACCTCTCTTGGCCGAAGGCTCEST: gi|37834355|gb|BJ592367.1|BJ592367
genomic: ACCTGGACTTGCAGCGAGGAATCTCCTGCTCATCACAGCTTGGTCGTCAGgtattttatg ... cgtttctcagCCGACGAGCTCTCGTTTGCAGGGGTCTGATACCTCTCTTGGCCGAAGGCTC
EST: ACCTGGACTTGCAGCGAGGAATCTCCTGCTCATCACAGCTTGGTCGTCAG CCGACGAGCTCTCGTTTGCAGGGGTCTGATACCTCTCTTGGCCGAAGGCTC
genomic: ACCTGGACTTGCAGCGAGGAATCTCCTGCTCATCACAGCTTGGTCGTCAGgtattttatg ... cgtttctcagCCGACGAGCTCTCGTTTGCAGGGGTCTGATACCTCTCTTGGCCGAAGGCTC
gtttgtagtgatacattgttaacgttgccctttgttttcgaggtacgtttctcagCCGACGAGCTCTCGTTTGCAGGGGTCTGATACCTCTCTTGGCCGAAGGCTCAGCAAAGGCTACTGATTCGGAATCAACAGATGATATTTTGAATGATGCA
tgttaac putative branch site (score: 2)
cgtttctc putative PPT
attgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttatgtgtgcgaaccctatttccatgatatttttaaatggcaatgttattctgcctgtgcatggatatggaccgatgggttgtgtttgtagtgatacattgttaacgttgccctttgttttcgaggtacgtttctcagCCGACGAGCTCTCGTTTGCAGGGGTCTGATACCTCTCTTGGCCGAAGGCTCAGCAAAGGCTACTGATTCGGAATCAACAGATGATATTTTGAATGATGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG