1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtccgtgtttttatcaatgtctttaattattttctatcttttcaacatatcctcctcttgatgcgtaatactagagatcacctgtatatattttctttaaatttgctttcacattaatttgattgttcgtcctgatccctgaactctcaatgacctgtcttcaccagGTATTACGTTTGTCAGCTGCAACCCAGAATTTACCGCGATCATCTGTCTGCAACGTGCATGGAGTAAACCCTCAATTCCTGAGTATTGGACGGGCGATTG
species | Physcomitrella patens |
transcript | PP1S123_79V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCTTTTAAAGCACGTGAACAATTGGGTGGTTCGAATATACTGCGATAAG GTATTACGTTTGTCAGCTGCAACCCAGAATTTACCGCGATCATCTGTCTGCEST: gi|162239939|gb|FC414829.1|FC414829
genomic: TTCTTTTAAAGCACGTGAACAATTGGGTGGTTCGAATATACTGCGATAAGgtccgtgttt ... tcttcaccagGTATTACGTTTGTCAGCTGCAACCCAGAATTTACCGCGATCATCTGTCTGC
EST: TTCTTTTAAAGCACGTGAACAATTGGGTGGTTCGAATATACTGCGATAAG GTATTACGTTTGTCAGCTGCAACCCAGAATTTACCGCGATCATCTGTCTGCEST: gi|67578331|gb|BJ950498.1|BJ950498
genomic: TTCTTTTAAAGCACGTGAACAATTGGGTGGTTCGAATATACTGCGATAAGgtccgtgttt ... tcttcaccagGTATTACGTTTGTCAGCTGCAACCCAGAATTTACCGCGATCATCTGTCTGC
EST: TTCTTTTAAAGCACGTGAACAATTGGGTGGTTCGAATATACTGCGATAAG GTATTACGTTTGTCAGCTGCAACCCAGAATTTACCGCGATCATCTGTCTGCEST: gi|162181391|gb|FC358447.1|FC358447
genomic: TTCTTTTAAAGCACGTGAACAATTGGGTGGTTCGAATATACTGCGATAAGgtccgtgttt ... tcttcaccagGTATTACGTTTGTCAGCTGCAACCCAGAATTTACCGCGATCATCTGTCTGC
EST: TTCTTTTAAAGCACGTGAACAATTGGGTGGTTCGAATATACTGCGATAAG GTATTACGTTTGTCAGCTGCAACCCAGAATTTACCGCGATCATCTGTCTGCEST: gi|162157797|gb|FC334068.1|FC334068
genomic: TTCTTTTAAAGCACGTGAACAATTGGGTGGTTCGAATATACTGCGATAAGgtccgtgttt ... tcttcaccagGTATTACGTTTGTCAGCTGCAACCCAGAATTTACCGCGATCATCTGTCTGC
EST: TTCTTTTAAAGCACGTGAACAATTGGGTGGTTCGAATATACTGCGATAAG GTATTACGTTTGTCAGCTGCAACCCAGAATTTACCGCGATCATCTGTCTGC
genomic: TTCTTTTAAAGCACGTGAACAATTGGGTGGTTCGAATATACTGCGATAAGgtccgtgttt ... tcttcaccagGTATTACGTTTGTCAGCTGCAACCCAGAATTTACCGCGATCATCTGTCTGC
attaatttgattgttcgtcctgatccctgaactctcaatgacctgtcttcaccagGTATTACGTTTGTCAGCTGCAACCCAGAATTTACCGCGATCATCTGTCTGCAACGTGCATGGAGTAAACCCTCAATTCCTGAGTATTGGACGGGCGATTG
tcctgat putative branch site (score: 4)
cctgtcttc putative PPT
tttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgtgtttttatcaatgtctttaattattttctatcttttcaacatatcctcctcttgatgcgtaatactagagatcacctgtatatattttctttaaatttgctttcacattaatttgattgttcgtcctgatccctgaactctcaatgacctgtcttcaccagGTATTACGTTTGTCAGCTGCAACCCAGAATTTACCGCGATCATCTGTCTGCAACGTGCATGGAGTAAACCCTCAATTCCTGAGTATTGGACGGGCGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA