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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcctgtgcaatgtgagtggaagtgaaattgtaattggtgtctgaacaggctgttgatggtactttatcgagagtaatggaatttgtgggtgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGATGTTTGAACGCCTTGGCCAGGACCCTTCCAGGGCTGATCGGTGGCAGTG

Basic information

species Physcomitrella patens
transcript PP1S120_164V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162157213|gb|FC332847.1|FC332847
EST:     CCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: CCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162194611|gb|FC370002.1|FC370002
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162220267|gb|FC395687.1|FC395687
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162185729|gb|FC361570.1|FC361570
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162189106|gb|FC365952.1|FC365952
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162171927|gb|FC349025.1|FC349025
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162200233|gb|FC376300.1|FC376300
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162255638|gb|FC431636.1|FC431636
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162153364|gb|FC329874.1|FC329874
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162168085|gb|FC343775.1|FC343775
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162196332|gb|FC375402.1|FC375402
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162182479|gb|FC357454.1|FC357454
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162243627|gb|FC420669.1|FC420669
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162197862|gb|FC373630.1|FC373630
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162198128|gb|FC373078.1|FC373078
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162197884|gb|FC373639.1|FC373639
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|100391926|gb|BY989615.1|BY989615
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162186939|gb|FC362617.1|FC362617
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|67712604|gb|BJ966053.1|BJ966053
EST:     TTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCAAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: TTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162163662|gb|FC340274.1|FC340274
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162184353|gb|FC360542.1|FC360542
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162198911|gb|FC372938.1|FC372938
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162169019|gb|FC345701.1|FC345701
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162183861|gb|FC360167.1|FC360167
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162186980|gb|FC363386.1|FC363386
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162165477|gb|FC340588.1|FC340588
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162159982|gb|FC335644.1|FC335644
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162215925|gb|FC392342.1|FC392342
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162179501|gb|FC356541.1|FC356541
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162229251|gb|FC405338.1|FC405338
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162198633|gb|FC373440.1|FC373440
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162266561|gb|FC441960.1|FC441960
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCACGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCACAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162171066|gb|FC346965.1|FC346965
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162180472|gb|FC356114.1|FC356114
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162187475|gb|FC362697.1|FC362697
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162182891|gb|FC358962.1|FC358962
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162193561|gb|FC370464.1|FC370464
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162181635|gb|FC357937.1|FC357937
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162186374|gb|FC361682.1|FC361682
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162175183|gb|FC352018.1|FC352018
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162153402|gb|FC329288.1|FC329288
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162175478|gb|FC350935.1|FC350935
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162168394|gb|FC344084.1|FC344084
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162152937|gb|FC329239.1|FC329239
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162184662|gb|FC361900.1|FC361900
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162184278|gb|FC360506.1|FC360506
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162220402|gb|FC396368.1|FC396368
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162250199|gb|FC427924.1|FC427924
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
EST: gi|162197432|gb|FC372810.1|FC372810
EST:     AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCT                         TCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA
genomic: AGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 75

TGCTGTGGAGGAGTACGCACAGAAGTACCCTGAAGAAGGTGCCGAGTTCAAGCAGTTGATCAGCGGTGAATTGCCCGAAGGCTGGGACAAGGCTCTTCCTgtaagtaaat ... tgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGATGTTTGAACGCCTTGGCCAGGACCCTTCCAGGGCTGATCGGTGGCAGTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaggctgttgatggtactttatcgagagtaatggaatttgtgggtgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGATGTTTGAACGCCTTGGCCAGGACCCTTCCAGGGCTGATCGGTGGCAGTG
      tgttgat  putative branch site (score: 75)
               tactttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgcctgtgcaatgtgagtggaagtgaaattgtaattggtgtctgaacaggctgttgatggtactttatcgagagtaatggaatttgtgggtgtgatgcagTCTTTCACCCCCGAGGACGCTGGTGACGCCACCCGCAACTTGTCCCAGAGATGTTTGAACGCCTTGGCCAGGACCCTTCCAGGGCTGATCGGTGGCAGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - -ctgaaca