1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtgtgatctgaagacaatgctctattgtgtgtgttcgcagcaatgccttgaaacgtggaggagacattttgaagtacttgctacagttatttaactcaccttcatgttttcgatccagGTGACGATGAGGAGGGAGGTTGGGAAATGGAGGATTTAGATATACCAGCTGATGCGAATGTGCCAGAGGTTGCACCTAATGCTGCCTACTTCGTTACTCC
species | Physcomitrella patens |
transcript | PP1S11_79V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGAGGCTCTAAATAGAGAGGGGGTGTTTGTTGCTGATGAAGAGGGCAGAG GTGACGATGAGGAGGGAGGTTGGGAAATGGAGGATTTAGATATACCAGCTGEST: gi|162183931|gb|FC360237.1|FC360237
genomic: CGAGGCTCTAAATAGAGAGGGGGTGTTTGTTGCTGATGAAGAGGGCAGAGgtaagtgtga ... ttcgatccagGTGACGATGAGGAGGGAGGTTGGGAAATGGAGGATTTAGATATACCAGCTG
EST: CGAGGCTCTAAATAGAGAGGGGGTGTTTGTTGCTGATGAAGAGGGCAGAG GTGACGATGAGGAGGGAGGTTGGGAAATGGAGGATTTAGATATACCAGCTGEST: gi|162197580|gb|FC375753.1|FC375753
genomic: CGAGGCTCTAAATAGAGAGGGGGTGTTTGTTGCTGATGAAGAGGGCAGAGgtaagtgtga ... ttcgatccagGTGACGATGAGGAGGGAGGTTGGGAAATGGAGGATTTAGATATACCAGCTG
EST: CGAGGCTCTAAATAGAGAGGGGGTGTTTGTTGCTGATGAAGAGGGCAGAG GTGACGATGAGGAGGGAGGTTGGGAAATGGAGGATTTAGATATACCAGCTGEST: gi|162161697|gb|FC339112.1|FC339112
genomic: CGAGGCTCTAAATAGAGAGGGGGTGTTTGTTGCTGATGAAGAGGGCAGAGgtaagtgtga ... ttcgatccagGTGACGATGAGGAGGGAGGTTGGGAAATGGAGGATTTAGATATACCAGCTG
EST: CGAGGCTCTAAATAGAGAGGGGGTGTTTGTTGCTGATGAAGAGGGCAGAG GTGACGATGAGGAGGGAGGTTGGGAAATGGAGGATTTAGATATACCAGCTG
genomic: CGAGGCTCTAAATAGAGAGGGGGTGTTTGTTGCTGATGAAGAGGGCAGAGgtaagtgtga ... ttcgatccagGTGACGATGAGGAGGGAGGTTGGGAAATGGAGGATTTAGATATACCAGCTG
acattttgaagtacttgctacagttatttaactcaccttcatgttttcgatccagGTGACGATGAGGAGGGAGGTTGGGAAATGGAGGATTTAGATATACCAGCTGATGCGAATGTGCCAGAGGTTGCACCTAATGCTGCCTACTTCGTTACTCC
aactcac putative branch site (score: 16)
tgttttc putative PPT
agttatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtgatctgaagacaatgctctattgtgtgtgttcgcagcaatgccttgaaacgtggaggagacattttgaagtacttgctacagttatttaactcaccttcatgttttcgatccagGTGACGATGAGGAGGGAGGTTGGGAAATGGAGGATTTAGATATACCAGCTGATGCGAATGTGCCAGAGGTTGCACCTAATGCTGCCTACTTCGTTACTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC