1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgcctccaagcgtttgttcagcaattgcatattcgatgtattttgatgataattcgattcgattcctatggtatggaaggtgcatgacaatatctgtcgatgtaatgattcaatgctttacctttccacagATTCGCTTCTTGCATGATCCGAGCAAGGCAGTGGGATATGTGGGAGCTGCCTTGAGCAGCACAATGGTCCGTTTTTTTAAGAAAGATGACGACACGTGGG
species | Physcomitrella patens |
transcript | PP1S11_387V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCTAAAGCAAACTCTCGACTTGGGCAACACTGGTCTTATTCCTCTCGAG ATTCGCTTCTTGCATGATCCGAGCAAGGCAGTGGGATATGTGGGAGCTGCCEST: gi|208359243|gb|DC954166.1|DC954166
genomic: CTCTAAAGCAAACTCTCGACTTGGGCAACACTGGTCTTATTCCTCTCGAGgtacgcctcc ... ctttccacagATTCGCTTCTTGCATGATCCGAGCAAGGCAGTGGGATATGTGGGAGCTGCC
EST: CTCTAAAGCAAACTCTCGACTTGGGCAACACTGGTCTTATTCCTCTCGAG ATTCGCTTCTTGCATGATCCGAGCAAGGCAGTGGGATATGTGGGAGCTGCCEST: gi|208382645|gb|DC919813.1|DC919813
genomic: CTCTAAAGCAAACTCTCGACTTGGGCAACACTGGTCTTATTCCTCTCGAGgtacgcctcc ... ctttccacagATTCGCTTCTTGCATGATCCGAGCAAGGCAGTGGGATATGTGGGAGCTGCC
EST: ACACTGGTCTTATTCCTCTCGAG ATTCGCTTCTTGCATGATCCGAGCAAGGCAGTGGGATATGTGGGAGCTGCC
genomic: ACACTGGTCTTATTCCTCTCGAGgtacgcctcc ... ctttccacagATTCGCTTCTTGCATGATCCGAGCAAGGCAGTGGGATATGTGGGAGCTGCC
aaggtgcatgacaatatctgtcgatgtaatgattcaatgctttacctttccacagATTCGCTTCTTGCATGATCCGAGCAAGGCAGTGGGATATGTGGGAGCTGCCTTGAGCAGCACAATGGTCCGTTTTTTTAAGAAAGATGACGACACGTGGG
tgctttacctttcc CT-rich tract
taatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcctccaagcgtttgttcagcaattgcatattcgatgtattttgatgataattcgattcgattcctatggtatggaaggtgcatgacaatatctgtcgatgtaatgattcaatgctttacctttccacagATTCGCTTCTTGCATGATCCGAGCAAGGCAGTGGGATATGTGGGAGCTGCCTTGAGCAGCACAATGGTCCGTTTTTTTAAGAAAGATGACGACACGTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG