1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctcctgtcattgccttctaaaaaccctgaaacagaagttgaatctctagttatctttcaaaaggtacgctactgactacggaaattgatgtttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTTCTTTTGTGGTGGAATTTTTCTTCGAGGCTGCCGAGGATAAAAACGTTTA
species | Physcomitrella patens |
transcript | PP1S115_125V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTT GGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTTEST: gi|37842940|gb|BJ600948.1|BJ600948
genomic: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTTgtgagttctt ... tttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTT
EST: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTT GGCAACTTTAACCTGTCTGATCATAGTCTTGCTATGCATCATCATTTCGTTEST: gi|100393349|gb|BY989833.1|BY989833
genomic: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTTgtgagttctt ... tttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTT
EST: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTT GGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTTEST: gi|162274387|gb|FC450414.1|FC450414
genomic: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTTgtgagttctt ... tttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTT
EST: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTT GGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTTEST: gi|162170117|gb|FC347029.1|FC347029
genomic: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTTgtgagttctt ... tttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTT
EST: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTT GGCAACTTTAACCTGTCTGATCATAGTCTTGGTATACATCATCATTTCGTTEST: gi|208375135|gb|DC944860.1|DC944860
genomic: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTTgtgagttctt ... tttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTT
EST: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTT GGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTTEST: gi|37852861|gb|BJ610869.1|BJ610869
genomic: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTTgtgagttctt ... tttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTT
EST: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTT GGCAACTTTAACCTGTCTGATCATAGTCTTGCTATGCATCATCATTTCGTTEST: gi|37850241|gb|BJ608249.1|BJ608249
genomic: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTTgtgagttctt ... tttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTT
EST: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTT GGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTTEST: gi|162170465|gb|FC347637.1|FC347637
genomic: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTTgtgagttctt ... tttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTT
EST: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTT GGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTTEST: gi|37852406|gb|BJ610414.1|BJ610414
genomic: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTTgtgagttctt ... tttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTT
EST: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTT GGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTTEST: gi|37845521|gb|BJ603529.1|BJ603529
genomic: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTTgtgagttctt ... tttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTT
EST: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTT GGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTTEST: gi|37844806|gb|BJ602814.1|BJ602814
genomic: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTTgtgagttctt ... tttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTT
EST: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTT GGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTTEST: gi|18335867|gb|BJ167888.1|BJ167888
genomic: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTTgtgagttctt ... tttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTT
EST: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTT GGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTTEST: gi|7207413|gb|AW561415.1|AW561415
genomic: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTTgtgagttctt ... tttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTT
EST: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTT GGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTT
genomic: CAGTCACGCCAATTGAAACAAGCCATGTGGATGAAGAATGCCAAGCTCTTgtgagttctt ... tttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTT
ctagttatctttcaaaaggtacgctactgactacggaaattgatgtttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTTCTTTTGTGGTGGAATTTTTCTTCGAGGCTGCCGAGGATAAAAACGTTTA
tttcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcctgtcattgccttctaaaaaccctgaaacagaagttgaatctctagttatctttcaaaaggtacgctactgactacggaaattgatgtttgttgcagGGCAACTTTAACCTGTCTGATCATAGTCTTGCTATACATCATCATTTCGTTCTTTTGTGGTGGAATTTTTCTTCGAGGCTGCCGAGGATAAAAACGTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT