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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctaaacagtttgttgttccactgtctgaagttcggatatgcgggtcgtgatgttgttgtgatcagtaaacctcatatgtgctttgtttattcttgccagCCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTTCATGCTCACTGCTTGTGCTCTCTTCTCCAAGACCTGGATCGAAGTGTCA

Basic information

species Physcomitrella patens
transcript PP1S114_48V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162262091|gb|FC437379.1|FC437379
EST:     CAGCTCATCCCAGTTGGAGGACTTGTCTACTACATCAGTCCCCCAACAAG                         CCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
genomic: CAGCTCATCCCAGTTGGAGGACTTGTCTACTACATCAGTCCCCCAACAAGgtattgccta ... ttcttgccagCCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
EST: gi|37839616|gb|BJ597624.1|BJ597624
EST:     TCAGTCCCCCAACAAG                         CCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
genomic: TCAGTCCCCCAACAAGgtattgccta ... ttcttgccagCCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
EST: gi|208368248|gb|DC951514.1|DC951514
EST:     AGCTCATCCCAGTTGGAGGACTTGTCTACTACATCAGTCCCCCCAACAAG                         CCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
genomic: AGCTCATCCCAGTTGGAGGACTTGTCTACTACATCAGT-CCCCCAACAAGgtattgccta ... ttcttgccagCCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
EST: gi|37839617|gb|BJ597625.1|BJ597625
EST:     CAGCTCATCCCAGTTGGAGGACTTGTCTACTACATCAGTCCCCCAACAAG                         CCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
genomic: CAGCTCATCCCAGTTGGAGGACTTGTCTACTACATCAGTCCCCCAACAAGgtattgccta ... ttcttgccagCCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
EST: gi|37835924|gb|BJ593936.1|BJ593936
EST:     TCCCAGTTGGAGGACTTGTCTACTACATCAGTCCCCCAACAAG                         CCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
genomic: TCCCAGTTGGAGGACTTGTCTACTACATCAGTCCCCCAACAAGgtattgccta ... ttcttgccagCCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
EST: gi|162179031|gb|FC356432.1|FC356432
EST:     CAGCTCATCCCAGTTGGAGGACTTGTCTACTACATCAGTCCCCCAACAAG                         CCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
genomic: CAGCTCATCCCAGTTGGAGGACTTGTCTACTACATCAGTCCCCCAACAAGgtattgccta ... ttcttgccagCCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
EST: gi|162262090|gb|FC437378.1|FC437378
EST:     ACATCAGTCCCCCAACAAG                         CCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
genomic: ACATCAGTCCCCCAACAAGgtattgccta ... ttcttgccagCCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
EST: gi|208375228|gb|DC948753.1|DC948753
EST:     TACATCAGTCCCCCAACAAG                         CCTNGGAGATATCGNTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
genomic: TACATCAGTCCCCCAACAAGgtattgccta ... ttcttgccagCCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
EST: gi|208388528|gb|DC957082.1|DC957082
EST:     CAGCTCATCCCAGTTGGAGGACTTGTCTACTACATCAGTCCCCCAACAAG                         CCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT
genomic: CAGCTCATCCCAGTTGGAGGACTTGTCTACTACATCAGTCCCCCAACAAGgtattgccta ... ttcttgccagCCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtgatgttgttgtgatcagtaaacctcatatgtgctttgtttattcttgccagCCTTGGAGATATCGTTGCCAACCCTTTCCACGCCATTTTCTACTTGACTTTCATGCTCACTGCTTGTGCTCTCTTCTCCAAGACCTGGATCGAAGTGTCA
                                    ctttgtttattctt  CT-rich tract
                                     tttgtttatt  TA-rich tract