1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagtttacctgccaatttttatccttaaggtgtcgattcttgcatactagtgtggagtgatgagaaaatttcaatgataaacctctttgcatcggattgcactcggaataatttagcgcgccttggactaatttggagatgatgtttgtgtagGCATATTACTTGGCTGCCCCCTTTCCCATTGAAAGAGCACCCGCTACTAGAGTGTCTTACGGCAGGAAGAAGAGTGGTGTGAAAGTGTATGAACTCACGA
species | Physcomitrella patens |
transcript | PP1S114_207V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTACAACAGCCTTGGTGCATTTGCTACAATCAACCACTTGCATTTTCAG GCATATTACTTGGCTGCCCCCTTTCCCATEST: gi|162153465|gb|FC329351.1|FC329351
genomic: GCTACAACAGCCTTGGTGCATTTGCTACAATCAACCACTTGCATTTTCAGgtagtttacc ... gtttgtgtagGCATATTACTTGGCTGCCCCCTTTCCCAT
EST: GCTACAACAGCCTTGGTGCATTTGCTACAATCAACCACTTGCATTTTCAG GCATATTACTTGGCTGCCCCCTTTCCCATTGAAAGAGCACCCGCTACTAGAEST: gi|100376965|gb|BY949552.1|BY949552
genomic: GCTACAACAGCCTTGGTGCATTTGCTACAATCAACCACTTGCATTTTCAGgtagtttacc ... gtttgtgtagGCATATTACTTGGCTGCCCCCTTTCCCATTGAAAGAGCACCCGCTACTAGA
EST: GCTACAACAGCCTTGGTGCATTTGCTACAATCAACCACTTGCATTTTCAG GCATATTACTTGGCTGCCCCCTTTCCCATTGAAAGAGCACCCGCTACTAGAEST: gi|67568739|gb|BJ941563.1|BJ941563
genomic: GCTACAACAGCCTTGGTGCATTTGCTACAATCAACCACTTGCATTTTCAGgtagtttacc ... gtttgtgtagGCATATTACTTGGCTGCCCCCTTTCCCATTGAAAGAGCACCCGCTACTAGA
EST: GCTACAACAGCCTTGGTGCATTTGCTACAATCAACCACTTGCATTTTCAG GCATATTACTTGGCTGCCCCCTTTCCCATTGAAAGAGCACCCGCTACTAGAEST: gi|162159010|gb|FC334844.1|FC334844
genomic: GCTACAACAGCCTTGGTGCATTTGCTACAATCAACCACTTGCATTTTCAGgtagtttacc ... gtttgtgtagGCATATTACTTGGCTGCCCCCTTTCCCATTGAAAGAGCACCCGCTACTAGA
EST: GCTACAACAGCCTTGGTGCATTTGCTACAATCAACCACTTGCATTTTCAG GCATATTACTTGGCTGCCCCCTTTCCCATTGAAAGAGCACCCGCTACTAGA
genomic: GCTACAACAGCCTTGGTGCATTTGCTACAATCAACCACTTGCATTTTCAGgtagtttacc ... gtttgtgtagGCATATTACTTGGCTGCCCCCTTTCCCATTGAAAGAGCACCCGCTACTAGA
gcactcggaataatttagcgcgccttggactaatttggagatgatgtttgtgtagGCATATTACTTGGCTGCCCCCTTTCCCATTGAAAGAGCACCCGCTACTAGAGTGTCTTACGGCAGGAAGAAGAGTGGTGTGAAAGTGTATGAACTCACGA
gactaat putative branch site (score: 92)
aataattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtttacctgccaatttttatccttaaggtgtcgattcttgcatactagtgtggagtgatgagaaaatttcaatgataaacctctttgcatcggattgcactcggaataatttagcgcgccttggactaatttggagatgatgtttgtgtagGCATATTACTTGGCTGCCCCCTTTCCCATTGAAAGAGCACCCGCTACTAGAGTGTCTTACGGCAGGAAGAAGAGTGGTGTGAAAGTGTATGAACTCACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG