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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgcatcttgcctcatttcctggttccgttcacgtggacagccaattcggccttgattggttatcagagattgacgctattgtcgaaatgattcaagctatgttgtgttgctttgcagctggttcttgttcacgtgtaattttttcggtaatttatgctcattggcagGAAATGAGGCTGTGGAATACATCATCAACCACGCGGAAGTTTCAATTGCTTTTGTGCAGGATACGAAGCTTGATTTA

Basic information

species Physcomitrella patens
transcript PP1S113_124V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S113_124V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv03s0063g01880.t01 (Vitis vinifera), 3'ss of exon 5
gtgatgcatcttgcctcatttcctggttccgt-tcacgtggacagccaatt-cggccttgattggttatcagagattgacgcta-ttgtcgaaatgattcaagctatgttgtgttgctttgcagctggttcttgttcacgtgtaattttttcggtaatttatgctcattggcagGAAATGAGGCTGTGGAATACATCATCAACCACGCGGAAGTTTCAATTGCTTTTGTGCAGGATA-CGAAGCTTGATTTA
                 || || |   |  || |||  |   |  |||||   | | | || | |||  ||  ||||     || || || | | | |  |||     ||| ||  |   |     |||| |   |    || |  | || |  |  ||||  || |||| ||||   | | |||||||| | |||||||||||| || ||||||||||| |||||||| || || | | |      |  | 
---------------gtatatcgtacatgtgtctcaaataagc--ccaatagtgacttagaattgttgccatggatttttcttaattatccataagctagaaga---attgagt-acccagt--tcggttatcaattg-atg-agctcttactttgttttactcttattg-cagGTGCTAATGCTGTGGAGTTCATCATCAACCATGCTGAAGTTTCAATAGCTTTTGTTCAAGAAAGCAAGATACCAGCT-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcagctggttcttgttcacgtgtaattttttcggtaatttatgctcattggcagGAAATGAGGCTGTGGAATACATCATCAACCACGCGGAAGTTTCAATTGCTTTTGTGCAGGATACGAAGCTTGATTTA
                     tgtaatttttt  TA-rich tract