1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggcccttgatcatagggcttgatcacttcacttgatttacgagtactgtatctaatgagtttttgttacccaatgaaatattggtattgtttgtgcccagTTGGTGCGGAGGTGGTGTTGAAGGCTACAAATGTGGACGGTGTGTATGATAGCGACCCTAAGAAGAACAAAAAAGCTGTTTTACTCGAGCATGTCTCCTA
species | Physcomitrella patens |
transcript | PP1S10_28V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAACCCCTTCTTCACCACAGACACAGCAGCTGCCCTTCGTGCTGCCGAAA TTGGTGCGGAGGTGGTGTTGAAGGCTACAAATGTGGACGGTGTGTATGATAEST: gi|162268876|gb|FC446010.1|FC446010
genomic: CAACCCCTTCTTCACCACAGACACAGCAGCTGCCCTTCGTGCTGCCGAAAgtaagtccaa ... ttgtgcccagTTGGTGCGGAGGTGGTGTTGAAGGCTACAAATGTGGACGGTGTGTATGATA
EST: CAACCCCTTCTTCACCACAGACACAGCAGCTGCCCTTCGTGCTGCCGAAA TTGGTGCGGAGGTGGTGTTGAAGGCTACAAATGTGGACGGTGTGTATGATA
genomic: CAACCCCTTCTTCACCACAGACACAGCAGCTGCCCTTCGTGCTGCCGAAAgtaagtccaa ... ttgtgcccagTTGGTGCGGAGGTGGTGTTGAAGGCTACAAATGTGGACGGTGTGTATGATA
ctgtatctaatgagtttttgttacccaatgaaatattggtattgtttgtgcccagTTGGTGCGGAGGTGGTGTTGAAGGCTACAAATGTGGACGGTGTGTATGATAGCGACCCTAAGAAGAACAAAAAAGCTGTTTTACTCGAGCATGTCTCCTA
atctaat putative branch site (score: 28)
aatgaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcccttgatcatagggcttgatcacttcacttgatttacgagtactgtatctaatgagtttttgttacccaatgaaatattggtattgtttgtgcccagTTGGTGCGGAGGTGGTGTTGAAGGCTACAAATGTGGACGGTGTGTATGATAGCGACCCTAAGAAGAACAAAAAAGCTGTTTTACTCGAGCATGTCTCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT