1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgagaaaaatctgggacattttcacggtgatactgatcaagcaatttgttaatcgctgatctctctcaactcacctagaattctggtattgttggtgcagATTGTAACAGGCTTAGCTGATCCTTCAGCTAACATTATTTTTGGAGCAGTAGTAGATGATAAATACACAGGTGAAGTCCATGTAACGATTATTGCCACGG
species | Physcomitrella patens |
transcript | PP1S109_52V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCACTGGTGGCTCGGACCTCACACTGCAGGAAGTGAATACTGTATCTCAG ATTGTAACAGGCTTAGCTGATCCTTCAGCTAACATTATTTTTGGAGCAGTAEST: gi|162195508|gb|FC369872.1|FC369872
genomic: TCACTGGTGGCTCGGACCTCACACTGCAGGAAGTGAATACTGTATCTCAGgtttgcttcc ... gttggtgcagATTGTAACAGGCTTAGCTGATCCTTCAGCTAACATTATTTTTGGAGCAGTA
EST: TCACTGGTGGCTCGGACCTCACACTGCAGGAAGTGAATACTGTATCTCAG ATTGTAACAGGCTTAGCTGATCCTTCAGCTAACATTATTTTTGGAGCAGTA
genomic: TCACTGGTGGCTCGGACCTCACACTGCAGGAAGTGAATACTGTATCTCAGgtttgcttcc ... gttggtgcagATTGTAACAGGCTTAGCTGATCCTTCAGCTAACATTATTTTTGGAGCAGTA
ttgttaatcgctgatctctctcaactcacctagaattctggtattgttggtgcagATTGTAACAGGCTTAGCTGATCCTTCAGCTAACATTATTTTTGGAGCAGTAGTAGATGATAAATACACAGGTGAAGTCCATGTAACGATTATTGCCACGG
aactcac putative branch site (score: 7)
tagaatt TA-rich tract