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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaaaacataatcacgatgggttatggatttctttggagattttgttggtattgcagatgatgtttctatgattaatttatgtaaatggccaaaatacagATAGAGAAAACAGTTTTTGTTATATTCTTTTCTGGAGAGCGCGCCAAAACAAAGATTTCCAAGATCTGCGACGCTTTTGGGGCCAATTGTTATCCTTTTC

Basic information

species Physcomitrella patens
transcript PP1S107_75V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162187153|gb|FC363663.1|FC363663
EST:     AACAGGCTTCAATTGAAGATGCTGTTGTAGATCCAGCTACTGGTGAAAAG                         ATAGAGAAAACAGTTTTTGTTATATTCTTTTCTGGAGAGCGCGCCAAAACA
genomic: AACAGGCTTCAATTGAAGATGCTGTTGTAGATCCAGCTACTGGTGAAAAGgttagtgctg ... caaaatacagATAGAGAAAACAGTTTTTGTTATATTCTTTTCTGGAGAGCGCGCCAAAACA
EST: gi|162154312|gb|FC330651.1|FC330651
EST:     AACAGGCTTCAATTGAAGATGCTGTTGTAGATCCAGCTACTGGTGAAAAG                         ATAGAGAAAACAGTTTTTGTTATATTCTTTTCTGGAGAGCGCGCCAAAACA
genomic: AACAGGCTTCAATTGAAGATGCTGTTGTAGATCCAGCTACTGGTGAAAAGgttagtgctg ... caaaatacagATAGAGAAAACAGTTTTTGTTATATTCTTTTCTGGAGAGCGCGCCAAAACA
EST: gi|162161442|gb|FC336816.1|FC336816
EST:     AACAGGCTTCAATTGAAGATGCTGTTGTAGATCCAGCTACTGGTGAAAAG                         ATAGAGAAAACAGTTTTTGTTATATTCTTTTCTGGAGAGCGCGCCAAAACA
genomic: AACAGGCTTCAATTGAAGATGCTGTTGTAGATCCAGCTACTGGTGAAAAGgttagtgctg ... caaaatacagATAGAGAAAACAGTTTTTGTTATATTCTTTTCTGGAGAGCGCGCCAAAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtattgcagatgatgtttctatgattaatttatgtaaatggccaaaatacagATAGAGAAAACAGTTTTTGTTATATTCTTTTCTGGAGAGCGCGCCAAAACAAAGATTTCCAAGATCTGCGACGCTTTTGGGGCCAATTGTTATCCTTTTC
                         gattaat  putative branch site (score: 3)
               atgtttctatgattaa  TA-rich tract