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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtttgttagtctggaagtcccgattttatgcatcttttattatcttttctgtccttatctatcgttcagaatgaatgaaatattgtaaatttgcacccgttaagtagattgcacttctgaccttatttacgcatgttttcggctttgacagCTTCGGTGCACATACAGAGCGTATGATGCAATGGATGAGATTACAGCAGCGTACTCCATTGCATTCAATAATTCTGGAACAAA

Basic information

species Physcomitrella patens
transcript PP1S103_120V6.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S103_120V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: GRMZM2G133749_T02 (Zea mays), 3'ss of exon 4
gtgggtttgttagtctggaagtcccgattttatgcatcttttattatcttttctgtccttatctatcgttcagaatgaatgaaatattgtaaatttgcacccgtta-agtagattgcacttctgaccttatttacgcatgttttcggctttgacagCTTCGGTGCACATACAGAGCGTATGATGCAATGGATGAGATTACAGCAGCGTACTCCATTGCATTCAATAATTCTGGAACAAA
                                                                     | ||| ||       | ||||   |    |    | | | |  |||    ||||||  ||||||        ||||||   |  ||||| |||||||||||| |||| |||||||| |||||||| || || || ||    || ||| | ||||||  ||| ||| | ||
--------------------------------------------------------------------gtaagactgttccgcttgttgtgtttcgttatgtctcacaattaattctggttctga--ttatttg-------tttcgggaattgcagCTCCGGTGCACATACCGAGCATATGATGCCATGGATGAAATAACTGCTGCACTTTCGATTTCTTTCAATTCTTCAGGATCTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgttaagtagattgcacttctgaccttatttacgcatgttttcggctttgacagCTTCGGTGCACATACAGAGCGTATGATGCAATGGATGAGATTACAGCAGCGTACTCCATTGCATTCAATAATTCTGGAACAAA
                  ttctgac  putative branch site (score: 2)
                          ttattta  TA-rich tract