1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aatcttatatgttggaatatttcagtctcgcattgcattggtgttgatcaaagggacaatcgttttctgatgtgacacgtggatgggcggtggtatccagGAGGGAAAGCTTTCCGCTCACGAAAGACAACAGGAGAAGACGAAGAGACGAATCGAGCAGCTGGAGAAATCAAATTTAGAGTCAAAAGATTGGACTATGC
species | Physcomitrella patens |
transcript | PP1S102_17V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGAGGGACCAGAGGCTATGGTCACTGATAGACAGATCGTACCAGCGGAG GAGGGAAAGCTTTCCGCTCACGAAAGACAACAGGAGAAGACGAAGAGACGAEST: gi|100452440|gb|CJ975272.1|CJ975272
genomic: ACGAGGGACCAGAGGCTATGGTCACTGATAGACAGATCGTACCAGCGGAGgttcgatttt ... tggtatccagGAGGGAAAGCTTTCCGCTCACGAAAGACAACAGGAGAAGACGAAGAGACGA
EST: ACGAGGGACCAGAGGCTATGGTCACTGATAGACAGATCGTACCAGCGGAG GAGGGAAAGCTTTCCGCTCACGAAAGACAACAGGAGAAGACGAAGAGACGAEST: gi|100447929|gb|CJ972228.1|CJ972228
genomic: ACGAGGGACCAGAGGCTATGGTCACTGATAGACAGATCGTACCAGCGGAGgttcgatttt ... tggtatccagGAGGGAAAGCTTTCCGCTCACGAAAGACAACAGGAGAAGACGAAGAGACGA
EST: ACGAGGGACCAGAGGCTATGGTCACTGATAGACAGATCGTACCAGCGGAG GAGGGAAAGCTTTCCGCTCACGAAAGACAACAGGAGAAGACGAAGAGACGA
genomic: ACGAGGGACCAGAGGCTATGGTCACTGATAGACAGATCGTACCAGCGGAGgttcgatttt ... tggtatccagGAGGGAAAGCTTTCCGCTCACGAAAGACAACAGGAGAAGACGAAGAGACGA
gatcaaagggacaatcgttttctgatgtgacacgtggatgggcggtggtatccagGAGGGAAAGCTTTCCGCTCACGAAAGACAACAGGAGAAGACGAAGAGACGAATCGAGCAGCTGGAGAAATCAAATTTAGAGTCAAAAGATTGGACTATGC
ttctgat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcttatatgttggaatatttcagtctcgcattgcattggtgttgatcaaagggacaatcgttttctgatgtgacacgtggatgggcggtggtatccagGAGGGAAAGCTTTCCGCTCACGAAAGACAACAGGAGAAGACGAAGAGACGAATCGAGCAGCTGGAGAAATCAAATTTAGAGTCAAAAGATTGGACTATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA