1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtataatgcgtggacgggcgggatgatgtggggaaagggtgggggtacgatgagtgcatgggttggtgcgggatgtggattgttggggggatggtggacgagctgacaggtggggtggggtgcgttgggcgatggttgcagGGGAATCCTCCGTGCTCGTTCTACAGTCGGTACGGTATATGCAAGTTTGGACCGACGTGCAAATTCGATCACCCGCTGGGAGGGAGCTTGACTTACAGTC
species | Physcomitrella patens |
transcript | PP1S102_155V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCCGTCACCGACGTGCCATTTGAGCCCCATGGGTCTTCCTTTGCGGCCT GGGAATCCTCCGTGCTCGTTCTACAGTCGGTACGGTATATGCAAGTTTGGAEST: gi|162168118|gb|FC343808.1|FC343808
genomic: CTCCGTCACCGACGTGCCATTTGAGCCCCATGGGTCTTCCTTTGCGGCCTgtaagtataa ... atggttgcagGGGAATCCTCCGTGCTCGTTCTACAGTCGGTACGGTATATGCAAGTTTGGA
EST: CTCCGTCACCGACGTGCCATTTGAGCCCCATGGGTCTTCCTTTGCGGCCT GGGAATCCTCCGTGCTCGTTCTACAGTCGGTACGGTATATGCAAGTTTGGA
genomic: CTCCGTCACCGACGTGCCATTTGAGCCCCATGGGTCTTCCTTTGCGGCCTgtaagtataa ... atggttgcagGGGAATCCTCCGTGCTCGTTCTACAGTCGGTACGGTATATGCAAGTTTGGA
ggggatggtggacgagctgacaggtggggtggggtgcgttgggcgatggttgcagGGGAATCCTCCGTGCTCGTTCTACAGTCGGTACGGTATATGCAAGTTTGGACCGACGTGCAAATTCGATCACCCGCTGGGAGGGAGCTTGACTTACAGTC
agctgac putative branch site (score: 19)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtataatgcgtggacgggcgggatgatgtggggaaagggtgggggtacgatgagtgcatgggttggtgcgggatgtggattgttggggggatggtggacgagctgacaggtggggtggggtgcgttgggcgatggttgcagGGGAATCCTCCGTGCTCGTTCTACAGTCGGTACGGTATATGCAAGTTTGGACCGACGTGCAAATTCGATCACCCGCTGGGAGGGAGCTTGACTTACAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT