1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gggtctgaatgtgccagctgttcctcacatcacactcggctgaggatttttggtaatatgggttgtttgtagtggtggctaataaattcttgctttgcagGATCCCAATCCAGATGATCCTCTCAATCATGAGGCTGCAGAAGTTTTGAGGGACAATCCTCGGCAGTTTGAACAAAGTGTGCGAAGATCGATGGCCGGCG
species | Physcomitrella patens |
transcript | PP1S102_139V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGTCCTTAGTATCAACTCCATTATTTATGGCCTTCAATACCTGTTTTTG GATCCCAATCCAGATGATCCTCTCAATCEST: gi|162223007|gb|FC399638.1|FC399638
genomic: CTGTCCTTAGTATCAACTCCATTATTTATGGCCTTCAATACCTGTTTTTGgtgagttctt ... tgctttgcagGATCCCAATCCAGATGATCCTCTCAATC
EST: CTGTCCTTAGTATCAACTCCATTATTTATGGCCTTCAATACCTGTTTTTG GATCCCAATCCAGATGATCCTCTCAATCATGAGGCTGCAGAAGTTTTGAGGEST: gi|162275672|gb|FC451661.1|FC451661
genomic: CTGTCCTTAGTATCAACTCCATTATTTATGGCCTTCAATACCTGTTTTTGgtgagttctt ... tgctttgcagGATCCCAATCCAGATGATCCTCTCAATCATGAGGCTGCAGAAGTTTTGAGG
EST: CTGTCCTTAGTATCAACTCCATTATTTATGGCCTTCAATACCTGTTTTTG GATCCCAATCCAGATGATCCTCTCAATCATGAGGCTGCAGAAGTTTTGAGGEST: gi|208381403|gb|DC927839.1|DC927839
genomic: CTGTCCTTAGTATCAACTCCATTATTTATGGCCTTCAATACCTGTTTTTGgtgagttctt ... tgctttgcagGATCCCAATCCAGATGATCCTCTCAATCATGAGGCTGCAGAAGTTTTGAGG
EST: CTGTCCTTAGTATCAACTCCATTATTTATGGCCTTCAATACCTGTTTTTG GATCCCAATCCAGATGATCCTCTCAATCATGAGGCTGCAGAAGTTTTGAGGEST: gi|162223269|gb|FC400238.1|FC400238
genomic: CTGTCCTTAGTATCAACTCCATTATTTATGGCCTTCAATACCTGTTTTTGgtgagttctt ... tgctttgcagGATCCCAATCCAGATGATCCTCTCAATCATGAGGCTGCAGAAGTTTTGAGG
EST: CTGTCCTTAGTATCAACTCCATTATTTATGGCCTTCAATACCTGTTTTTG GATCCCAATCCAGATGATCCTCTCAATCATGAGGCTGCAGAAGTTTTGAGGEST: gi|162275673|gb|FC451662.1|FC451662
genomic: CTGTCCTTAGTATCAACTCCATTATTTATGGCCTTCAATACCTGTTTTTGgtgagttctt ... tgctttgcagGATCCCAATCCAGATGATCCTCTCAATCATGAGGCTGCAGAAGTTTTGAGG
EST: CTGTCCTTAGTATCAACTCCATTATTTATGGCCTTCAATACCTGTTTTTG GATCCCAATCCAGATGATCCTCTCAATCATGAGGCTGCAGAAGTTTTGAGGEST: gi|208353937|gb|DC914091.1|DC914091
genomic: CTGTCCTTAGTATCAACTCCATTATTTATGGCCTTCAATACCTGTTTTTGgtgagttctt ... tgctttgcagGATCCCAATCCAGATGATCCTCTCAATCATGAGGCTGCAGAAGTTTTGAGG
EST: CTGTCCTTAGTATCAACTCCATTATTTATGGCCTTCAATACCTGTTTTTG GATCCCAATCCAGATGATCCTCTCAATCATGAGGCTGCAGAAGTTTTGAGG
genomic: CTGTCCTTAGTATCAACTCCATTATTTATGGCCTTCAATACCTGTTTTTGgtgagttctt ... tgctttgcagGATCCCAATCCAGATGATCCTCTCAATCATGAGGCTGCAGAAGTTTTGAGG
atttttggtaatatgggttgtttgtagtggtggctaataaattcttgctttgcagGATCCCAATCCAGATGATCCTCTCAATCATGAGGCTGCAGAAGTTTTGAGGGACAATCCTCGGCAGTTTGAACAAAGTGTGCGAAGATCGATGGCCGGCG
ggctaat putative branch site (score: 22)
ttcttgcttt putative PPT
taataaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggtctgaatgtgccagctgttcctcacatcacactcggctgaggatttttggtaatatgggttgtttgtagtggtggctaataaattcttgctttgcagGATCCCAATCCAGATGATCCTCTCAATCATGAGGCTGCAGAAGTTTTGAGGGACAATCCTCGGCAGTTTGAACAAAGTGTGCGAAGATCGATGGCCGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA