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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taatttatttgattttcacaatattgtttcggattgaaacttacgaatttatttttaaaatatcgcactctgaatgaacaactgtgatttggtgtttcagGTCCGAGATTACATTCATGTCATGGATTTGGCAAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAG

Basic information

species Physcomitrella patens
transcript PP1S101_67V6.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S101_67V6.2 (Physcomitrella patens), 3'ss of exon 5
lower sequence: AT4G23920.1 (Arabidopsis thaliana), 3'ss of exon 5
---------------------------------------------------taatttatttgattttcacaatattgtttcggattgaaacttacgaatttatttttaaaatatcgcactctgaatgaa-caactgtgatttggtg-tttcagGTCCGAGATTACATTCATGTCATGGATTTGGCAAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAG
                                                   | |     || | ||     ||||| |   | || | |  | |   |   | || | || |||   |      || |  || || || | || |  ||||||||  ||||||||||||||||||||||||| |||  ||| || |     ||||||   || ||    |  | || | | ||  
gtatgtgacttatgatgtcttatagacaacaaaccatttgacagatttacattacaatcttaaattgtgatatattatggagtatgggagataatacaacgaattgtgaattatattaacagatattattcatctttgttgtgtttctttcagGTTAGAGATTACATTCATGTCATGGATTTAGCAGATGGACACATAGCTGCTCTGCGTAAGCTAG--ATGA-TCTCAAAATCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208351996|gb|DC925805.1|DC925805
EST:     AAATGCTCACTGTCTTCGGCAAAGATTACAAAACCCGTGATGGAACTGGGGTTAG                     
genomic: AAATGCTCACTGTCTTCGGCAAAGATTACAAAACCCGTGATGGAACT--GG---Ggttaggtttt ... ggtgtt
EST: gi|208388227|gb|DC956977.1|DC956977
EST:     AAATGCTCACTGTCTTCGGCAAAGATTACAAAACCCGTGATGGAACTGGG                         GTCCGAGATTACATTCATGTCATGGATTTGGCAAGTGGTCATACGAAGGCT
genomic: AAATGCTCACTGTCTTCGGCAAAGATTACAAAACCCGTGATGGAACTGGGgttaggtttt ... ggtgtttcagGTCCGAGATTACATTCATGTCATGGATTTGGCAAGTGGTCATACGAAGGCT
EST: gi|208382034|gb|DC919921.1|DC919921
EST:     TACAAAACCCGTGA-NGAACTGGG                         GTCCGAGATTACATTCATGTCATGGATTTGGCAAGTGGTCATACGAAGGCT
genomic: TACAAAACCCGTGATGGAACTGGGgttaggtttt ... ggtgtttcagGTCCGAGATTACATTCATGTCATGGATTTGGCAAGTGGTCATACGAAGGCT
EST: gi|162192001|gb|FC367214.1|FC367214
EST:     AAATGCTCACTGTCTTCGGCAAAGATTACAAAACCCGTGATGGAACTGGG                         GTCCGAGATTACATTCATGTCATGGATTTGGCAAGTGGTCATACGAAGGCT
genomic: AAATGCTCACTGTCTTCGGCAAAGATTACAAAACCCGTGATGGAACTGGGgttaggtttt ... ggtgtttcagGTCCGAGATTACATTCATGTCATGGATTTGGCAAGTGGTCATACGAAGGCT
EST: gi|100423654|gb|BY976496.1|BY976496
EST:     AAATGCTCACTGTCTTCGGCAAAGATTACAAAACCCGTGATGGAACTGGG                         GTCCGAGATTACATTCATGTCATGGATTTGGCAAGTGGTCATACGAAGGCT
genomic: AAATGCTCACTGTCTTCGGCAAAGATTACAAAACCCGTGATGGAACTGGGgttaggtttt ... ggtgtttcagGTCCGAGATTACATTCATGTCATGGATTTGGCAAGTGGTCATACGAAGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttatttttaaaatatcgcactctgaatgaacaactgtgatttggtgtttcagGTCCGAGATTACATTCATGTCATGGATTTGGCAAGTGGTCATACGAAGGCTCTGGACAAACTCTTCACAACTCCCGACATAG
     atttttaaaatat  TA-rich tract