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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcagaggaactaaccattgtgaaatggactggtgatgaatcttctccaagattaatgacagctattgcggtatgatagagcccgtgtatttacgtgcagTGTTTCACAGGCTTTCTCAACCTGTAGAACCTGTCCGGTGGTCTGCGGTTGCTCTTATCACTGATGATCCGTACGCGGAGGCGGAGTCTCATCTCCCTGG

Basic information

species Physcomitrella patens
transcript PP1S101_169V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208368471|gb|DC955124.1|DC955124
EST:     TCTTAACACACTCATGGCTCAGCTCATGTTTGTATTCTTCAGCGGTGCTG                         TGTTTCACAGGCTTTCTCAACCTGTAGAACCTGTCCGGTGGTCTGCGGTTG
genomic: TCTTAACACACTCATGGCTCAGCTCATGTTTGTATTCTTCAGCGGTGCTGgtaaaatctt ... ttacgtgcagTGTTTCACAGGCTTTCTCAACCTGTAGAACCTGTCCGGTGGTCTGCGGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccaagattaatgacagctattgcggtatgatagagcccgtgtatttacgtgcagTGTTTCACAGGCTTTCTCAACCTGTAGAACCTGTCCGGTGGTCTGCGGTTGCTCTTATCACTGATGATCCGTACGCGGAGGCGGAGTCTCATCTCCCTGG
     gattaat  putative branch site (score: 3)
      attaatga  TA-rich tract