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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatgtgtgagcttggccatccagatttagtgtttgtttcaattattatcaaactgtgtctcaaataagtcctgcggaacttctgttgtattgtgtattagCTCGAAGGAGAAGCTACGGGAAGAGCTATCCGATTGGCTAAATTTGTCAACACACCCCTCTATGTAGTTCATGTCATGAGCATTGATGCTCTTGATGAGA

Basic information

species Physcomitrella patens
transcript PP1S101_168V6.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S101_168V6.1 (Physcomitrella patens), 3'ss of exon 5
lower sequence: Vv06s0009g02790.t01 (Vitis vinifera), 3'ss of exon 5
aatgtgtgagcttggccatcca---gatttagtgtttgtttcaattattatcaaactgtgtctcaaataagtcctgcggaacttctgttgtattgtgtattagCTCGAAGGAGAAGCTACGGGAAGAGCTATCCGATTGGCTAAATTTGTCAACACACCCCTCTATGTAGTTCATGTCATGAGCATTGATGCTCTTGATGAGA
  | | |    |||  | || |   |  | |  |||  || |  |||||  |     ||    |   ||  |  | | |   || | |||     | |   |||| |||||||| || || |  |||||||| || ||||| |  ||||| ||||| || ||||||||||||||||| ||||||||||||||  | || || |
-ctttattctgttgttcttctaattgtctgacagttctttccgtttatttcctggacgtcatgcttttatataat-ctgtcttttttttggcccttatgc-agCTAGAAGGAGAGGCAACTGCTAGAGCTATTCGGTTGGCCAGTTTTGTTAACACGCCTCTCTATGTAGTTCATGTGATGAGCATTGATGCGATGGAAGAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcaaactgtgtctcaaataagtcctgcggaacttctgttgtattgtgtattagCTCGAAGGAGAAGCTACGGGAAGAGCTATCCGATTGGCTAAATTTGTCAACACACCCCTCTATGTAGTTCATGTCATGAGCATTGATGCTCTTGATGAGA
              tcaaataa  TA-rich tract