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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagcttacaaatgatattcttcaggcatacccctatttttcttgagttatggtgaaccattcccacacgtaaattgctaacctgggaagagggaaggcagGGTGTAGTGCATTGGCAGCCGCCTGAAGAAGCGTTGTCGAAGATAAAAATTATTGTCGACGAGCCCTCAACAAGCCAATATGGTGCAGACGAGGGCCTAC

Basic information

species Physcomitrella patens
transcript PP1S9_356V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100383772|gb|BY969301.1|BY969301
EST:     ATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAG                         GGTGTAGTGCATTGGCAGCCGCCTGAAGAAGCGTTGTCGAAGATAAAAATT
genomic: ATGCAGGAGTTGTTACGTGGTGCAACAGATGTTATATCATTGGCACAGgtgcatctgt ... gggaaggcagGGTGTAGTGCATTGGCAGCCGCCTGAAGAAGCGTTGTCGAAGATAAAAATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatggtgaaccattcccacacgtaaattgctaacctgggaagagggaaggcagGGTGTAGTGCATTGGCAGCCGCCTGAAGAAGCGTTGTCGAAGATAAAAATTATTGTCGACGAGCCCTCAACAAGCCAATATGGTGCAGACGAGGGCCTAC
                             tgctaac  putative branch site (score: 1)
                        taaatt  TA-rich tract