1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatgaagtaacgtttgaatgccacgttgccttctctcgcatgtgtttttgaatatatgcagtcaggagttaactgtgcctggtgttctgtttttcagcagCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAGGACGAGGAGGAACCTCTTGATGACGAGGATGACGAGGAACATGGTGACACCT
species | Physcomitrella patens |
transcript | PP1S97_167V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTGCAGEST: gi|18335857|gb|BJ167878.1|BJ167878
genomic: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGT---Ggtgagtactg ... ttttcagc
EST: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTGCAGEST: gi|18338539|gb|BJ170563.1|BJ170563
genomic: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGT---Ggtgagtactg ... ttttcagc
EST: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTGCAGEST: gi|208373173|gb|DC945141.1|DC945141
genomic: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGT---Ggtgagtactg ... ttttcagc
EST: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTGCAG
genomic: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGT---Ggtgagtactg ... ttttcagc
ttttgaatatatgcagtcaggagttaactgtgcctggtgttctgtttttcagcagCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAGGACGAGGAGGAACCTCTTGATGACGAGGATGACGAGGAACATGGTGACACCT
agttaac putative branch site (score: 4)
ttctgtttttc putative PPT
aatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgaagtaacgtttgaatgccacgttgccttctctcgcatgtgtttttgaatatatgcagtcaggagttaactgtgcctggtgttctgtttttcagcagCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAGGACGAGGAGGAACCTCTTGATGACGAGGATGACGAGGAACATGGTGACACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG