1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcagtgtgttcggcttgatgttattactgtagccagagatgtgttgaatgattattttccaggtctcaaaccaggttttgaacccatcaatcgtgtgcagAAGCTGCGCCTTTGAATCTGGTAAGAGGAACTGTCCTCCTTAATTGTGCAGGGGGCATGAACAACAAGGCAGTTACAGACGATTGGCGTCTCAAGCTGGC
species | Physcomitrella patens |
transcript | PP1S90_2V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTCGTCGGAAACTCTATAGGAAGTCTAGCATGCCTGATTGCATCTGCAG AAGCTGCGCCTTTGAATCTGGTAAGAGGAACTGTCCTCCTTAATTGTGCAGEST: gi|208352882|gb|DC921794.1|DC921794
genomic: TCTCGTCGGAAACTCTATAGGAAGTCTAGCATGCCTGATTGCATCTGCAGgtgacgattt ... tcgtgtgcagAAGCTGCGCCTTTGAATCTGGTAAGAGGAACTGTCCTCCTTAATTGTGCAG
EST: TCTCGTCGGAAACTCTATAGGAAGTCTAGCATGCCTGATTGCATCTGCAG AAGCTGCGCCTTTGAATCTGGTAAGAGGAACTGTCCTCCTTAATTGTGCAG
genomic: TCTCGTCGGAAACTCTATAGGAAGTCTAGCATGCCTGATTGCATCTGCAGgtgacgattt ... tcgtgtgcagAAGCTGCGCCTTTGAATCTGGTAAGAGGAACTGTCCTCCTTAATTGTGCAG
gaatgattattttccaggtctcaaaccaggttttgaacccatcaatcgtgtgcagAAGCTGCGCCTTTGAATCTGGTAAGAGGAACTGTCCTCCTTAATTGTGCAGGGGGCATGAACAACAAGGCAGTTACAGACGATTGGCGTCTCAAGCTGGC
attatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagtgtgttcggcttgatgttattactgtagccagagatgtgttgaatgattattttccaggtctcaaaccaggttttgaacccatcaatcgtgtgcagAAGCTGCGCCTTTGAATCTGGTAAGAGGAACTGTCCTCCTTAATTGTGCAGGGGGCATGAACAACAAGGCAGTTACAGACGATTGGCGTCTCAAGCTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - -tgttgaa