1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtgagtcttttgtgtggatctttgtgcgtctgttgggttgagtttatcgtattatagactattaggtgtatttatttccaagtaagctacttcggtgtgtacttagaagattagtgatgcagaattctacttatttagacgtgcgtttccagGAACTTTTACGAAGAACGTGGTGGCTGCAGCGCCTGTAATCTACTGCAAAAAAACTTTGGCAGATTCATCCACA
species | Physcomitrella patens |
transcript | PP1S90_220V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAACCTGACCTGGCTTTGATCGTTTGCGACACGGATGCTGTCTCCGCTG GAACTTTTACGAAGAACGTGGTGGCTGCAGCGCCTGTAATCTACTGCNNNNEST: gi|162169383|gb|FC345739.1|FC345739
genomic: AAAACCTGACCTGGCTTTGATCGTTTGCGACACGGATGCTGTCTCCGCTGgtgagtcttt ... gcgtttccagGAACTTTTACGAAGAACGTGGTGGCTGCAGCGCCTGTAATCTACTGCAAAA
EST: AAAACCTGACCTGGCTTTGATCGTTTGCGACACGGATGCTGTCTCCGCTG GAACTTTTACGAAGAACGTGGTGGCTGCAGCGCCTGTAATCTACTGCNNNNEST: gi|162152901|gb|FC329203.1|FC329203
genomic: AAAACCTGACCTGGCTTTGATCGTTTGCGACACGGATGCTGTCTCCGCTGgtgagtcttt ... gcgtttccagGAACTTTTACGAAGAACGTGGTGGCTGCAGCGCCTGTAATCTACTGCAAAA
EST: AAAACCTGACCTGGCTTTGATCGTTTGCGACACGGATGCTGTCTCCGCTG GAACTTTTACGAAGAACGTGGTGGCTGCAGCGCCTGTAATCTACTGCNNNNEST: gi|162186918|gb|FC362596.1|FC362596
genomic: AAAACCTGACCTGGCTTTGATCGTTTGCGACACGGATGCTGTCTCCGCTGgtgagtcttt ... gcgtttccagGAACTTTTACGAAGAACGTGGTGGCTGCAGCGCCTGTAATCTACTGCAAAA
EST: AAAACCTGACCTGGCTTTGATCGTTTGCGACACGGATGCTGTCTCCGCTG GAACTTTTACGAAGAACGTGGTGGCTGCAGCGCCTGTAATCTACTGCNNNNEST: gi|67578119|gb|BJ950286.1|BJ950286
genomic: AAAACCTGACCTGGCTTTGATCGTTTGCGACACGGATGCTGTCTCCGCTGgtgagtcttt ... gcgtttccagGAACTTTTACGAAGAACGTGGTGGCTGCAGCGCCTGTAATCTACTGCAAAA
EST: AAAACCTGACCTGGCTTTGATCGTTTGCGACACGGATGCTGTCTCCGCTG GAACTTTTACGAAGAACGTGGTGGCTGCAGCGCCTGTAATCTACTGCNNNN
genomic: AAAACCTGACCTGGCTTTGATCGTTTGCGACACGGATGCTGTCTCCGCTGgtgagtcttt ... gcgtttccagGAACTTTTACGAAGAACGTGGTGGCTGCAGCGCCTGTAATCTACTGCAAAA
tgtacttagaagattagtgatgcagaattctacttatttagacgtgcgtttccagGAACTTTTACGAAGAACGTGGTGGCTGCAGCGCCTGTAATCTACTGCAAAAAAACTTTGGCAGATTCATCCACA
cgtttcc CT-rich tract
aattctacttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcttttgtgtggatctttgtgcgtctgttgggttgagtttatcgtattatagactattaggtgtatttatttccaagtaagctacttcggtgtgtacttagaagattagtgatgcagaattctacttatttagacgtgcgtttccagGAACTTTTACGAAGAACGTGGTGGCTGCAGCGCCTGTAATCTACTGCAAAAAAACTTTGGCAGATTCATCCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT