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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaattgcacctagaccacatcactggtcgctgttcatgaatttccagtttgcgttcatcaggtcctgtgcgccggggatgtctctgagagatacgtcgtgatgtggtctagcagAGTCCCGATGGATACACTGTGGCATCCGCTGCCGGCGACGAGACTTTGAGATTTTGGAATGTGTTCGGAACACCTGAGGCCAAATTAGTGAACCAGGCAA

Basic information

species Physcomitrella patens
transcript PP1S8_56V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S8_56V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ13752 (Selaginella moellendorffii), 3'ss of exon 3
gttagtaattgcacctagaccacatcactggtcgctgttcatgaatttccagtttgcgttcatcaggtcctgtgcgccggggatgtctctgagagatacgtcgtgatgtggtctagcagAGTCCCGATGGATACACTGTGGCATCCGCTGCCGGCGACGAGACTTTGAGATTTTGGAATGTGTTCGGAACACCTGAGGCCAAATTAGTGA-ACCAGGCAA
                                                   || |||   | |    || |        || | ||   ||||| |||| |       ||   | ||||||||||||||| || ||||||||||| || || ||||||||||||||| | || ||| | |||||||| ||||| ||  | | |   | || | | | || 
---------------------------------------------------gtctgctccctttctttctta-------ggaaagtgcttgagacatacctt------tgtatttgcagAGTCCCGATGGTTATACTGTGGCATCGGCCGCTGGCGACGAGACTTTGCGCTTCTGGCAGGTGTTCGGGACACCCGACACAACAAAGGCGACAGCGGTCA-

upper sequence: PP1S8_56V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ29191 (Selaginella moellendorffii), 3'ss of exon 3
gttagtaattgcacctagaccacatcactggtcgctgttcatgaatttccagtttgcgttc--atcaggtcctgtgcgccggggatgtctctgagagatacgtcgtgatgtggtctagcagAGTCCCGATGGATACACTGTGGCATCCGCTGCCGGCGACGAGACTTTGAGATTTTGGAATGTGTTCGGAACACCTGAGGCCAAATTAGTGA-ACCAGGCAA
                                                   || |||   |   |       | |      || | ||   ||||| |||| |       ||   | ||||||||||||||| || ||||||||||| || || ||||||||||||||| | || ||| | |||||||| ||||| ||  | | |   |  | | ||| || 
---------------------------------------------------gtctgctccctagtttttctttctttcttaggaaagtgcttgagacatacctt------tgtatttgcagAGTCCCGATGGTTATACTGTGGCATCGGCCGCTGGCGACGAGACTTTGCGCTTCTGGCAGGTGTTCGGGACACCCGACACAACAAAGGCAACAGCAGTCA-