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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttgtgggatgttagtgtttgtttggttgtattatgcattgattgatttaattttgttgtggtggttgggcgaatggagcgtgtttgtgagtcaatgcgagaggcgggcggttgggagggcgatgggagagtctgagaggtactgggatgtttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGTGGGTGTGCCGGGAGCGGACGGGCTTCAAATTCCTGGGGAGTCGGCGAAT

Basic information

species Physcomitrella patens
transcript PP1S8_3V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162203208|gb|FC379305.1|FC379305
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|100399907|gb|BY990681.1|BY990681
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|208366136|gb|DC955237.1|DC955237
EST:     CTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCNGGCCAGCCATGGGCGT
genomic: CTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|208380189|gb|DC927468.1|DC927468
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGNCNTNNTGCGATGATGAA                         GTACTGGANCGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATNGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|208383022|gb|DC927772.1|DC927772
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGNCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162165655|gb|FC341494.1|FC341494
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162156693|gb|FC333549.1|FC333549
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|208360463|gb|DC930816.1|DC930816
EST:     AAGCCGGTGCTGGAGGAAATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162170009|gb|FC345062.1|FC345062
EST:     GCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: GCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162174547|gb|FC350202.1|FC350202
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|100399617|gb|BY972808.1|BY972808
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|208396385|gb|DC920065.1|DC920065
EST:     AGACCNGCGGCCCTGCTGCGATGAT-AA                         GTACT-GAACGACCCCGCAGTCCTGAGCA-GNTCGGNCAANCCATGGGCGT
genomic: AGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|208356212|gb|DC957330.1|DC957330
EST:     GTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: GTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162210973|gb|FC387071.1|FC387071
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162155861|gb|FC332410.1|FC332410
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|208369839|gb|DC951928.1|DC951928
EST:     GTGCTGGAGGAGATCGAGANCNGCGGCCCTGCTGCGATGATGAA                         GTACT-GNACGANCCCGCAGTCCTGAGCAGGNTCNGGCAAGCCAT-GGCGT
genomic: GTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162209197|gb|FC385416.1|FC385416
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162151736|gb|FC328593.1|FC328593
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|208358799|gb|DC957627.1|DC957627
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162192827|gb|FC369652.1|FC369652
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|208386947|gb|DC956930.1|DC956930
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|208374895|gb|DC956168.1|DC956168
EST:     TGCGATGAT-NA                         GTACTNGNACGACCCCGCAGTCCTGAGCA-GCTCGGCCAAGCCAT-GGCGT
genomic: TGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162187054|gb|FC362836.1|FC362836
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162277694|gb|FC453533.1|FC453533
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162153901|gb|FC329408.1|FC329408
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162182198|gb|FC358213.1|FC358213
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162176549|gb|FC353018.1|FC353018
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162247198|gb|FC420240.1|FC420240
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|100388693|gb|BY970841.1|BY970841
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|208388687|gb|DC953449.1|DC953449
EST:     GATCGAGACCGGCGGCCCTGNTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTC-GGCCAGCCATGGGCGT
genomic: GATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162189806|gb|FC366055.1|FC366055
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|100390591|gb|BY971346.1|BY971346
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162209196|gb|FC385415.1|FC385415
EST:     GCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: GCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|67726133|gb|BJ976392.1|BJ976392
EST:     GCGATGATGAA                         GTACTNGAACGACCCCGCAGTCCTGAGCA-GNTC-GGCCAGCCATGGGCGT
genomic: GCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162152256|gb|FC328235.1|FC328235
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|67724791|gb|BJ975050.1|BJ975050
EST:     GCTGCGATGATGAA                         GTACTNGAACGACCCCGCAGTCCTGAGCAGGCTCGGNCAAGCCATGGGCGT
genomic: GCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|208369762|gb|DC947958.1|DC947958
EST:     TGCGATGATGAA                         -TACT-GNACGA-CCCGCA-TCCTGAGCA-GCTC-GGCCANCCATGGGCGT
genomic: TGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|67727517|gb|BJ977776.1|BJ977776
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|208373680|gb|DC952505.1|DC952505
EST:     TGCGATGATGAA                         GTACT-GNACGACCCCGCANTTCTGAGCAGGNTCGGNCAAGCCATGGGCGT
genomic: TGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162157916|gb|FC334902.1|FC334902
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|208358598|gb|DC946559.1|DC946559
EST:     GATCGAGANCGGCGGCCCTGCTGCGATGATGAA                         GTACTNGAACGACCCCGCAGTCCTGAGCAGGCTCGGNCAAGCCATGGGCGT
genomic: GATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
EST: gi|162173755|gb|FC349931.1|FC349931
EST:     AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAA                         GTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT
genomic: AAGCCGGTGCTGGAGGAGATCGAGACCGGCGGCCCTGCTGCGATGATGAAgtcagttgtg ... ttggttgcagGTACTGGAACGACCCCGCAGTCCTGAGCAGGCTCGGGCAAGCCATGGGCGT