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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agagctctctcgtacacattgttgcctgcttgtctgaaaattttgccttgtttctttttactcctgttttcactccaatttctgctggtttttgtaccagAGATATAAAACCTGACAACTTGCTCTTGGATAAGAACGGGCACATGAAGTTATCTGATTTTGGTCTTTGTAAGCCTTTGGACTGCTCAAACTTACCTGCG

Basic information

species Physcomitrella patens
transcript PP1S86_100V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162175283|gb|FC351481.1|FC351481
EST:     CAATGTGTTTTGGCTATCGAGTCAATCCACAAGCATAACTACATACATAG                         AGATATAAAACCTGACAACTTGCTCTTGGATAAGAACGGGCACATGAAGTT
genomic: CAATGTGTTTTGGCTATCGAGTCAATCCACAAGCATAACTACATACATAGgtattttggg ... tttgtaccagAGATATAAAACCTGACAACTTGCTCTTGGATAAGAACGGGCACATGAAGTT
EST: gi|162152200|gb|FC328179.1|FC328179
EST:     CAATGTGTTTTGGCTATCGAGTCAATCCACAAGCATAACTACATACATAG                         AGATATAAAACCTGACAACTTGCTCTTGGATAAGAACGGGCACATGAAGTT
genomic: CAATGTGTTTTGGCTATCGAGTCAATCCACAAGCATAACTACATACATAGgtattttggg ... tttgtaccagAGATATAAAACCTGACAACTTGCTCTTGGATAAGAACGGGCACATGAAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgtttctttttactcctgttttcactccaatttctgctggtttttgtaccagAGATATAAAACCTGACAACTTGCTCTTGGATAAGAACGGGCACATGAAGTTATCTGATTTTGGTCTTTGTAAGCCTTTGGACTGCTCAAACTTACCTGCG
                                           tttttgt  CT-rich tract
     tttcttttta  TA-rich tract