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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggaaaaaaagtagctgcttcgtattggctggacaatgtttttgcgatacgcaaaagatggatcatgttcggtatctgacctcatgcttcttgacatcagGTATGCGTACGTTGAATTTTTGGAGGTCGAAGCAGTTCAAAACGCTATACTTCTTAGTGAATCTGAGTTGCATAATCGTCCAATTAAG

Basic information

species Physcomitrella patens
transcript PP1S85_168V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67578985|gb|BJ951136.1|BJ951136
EST:     ACAGTTAATCGTGTCACAATTTTGACTGACAAGTTTGGATCACCCAAAGG                         GTATGCGTACGTTGAATTTTTGGAGGTCGAAGCAGTTCAAAACGCTATACT
genomic: ACAGTTAATCGTGTCACAATTTTGACTGACAAGTTTGGATCACCCAAAGGgtaatattcc ... ttgacatcagGTATGCGTACGTTGAATTTTTGGAGGTCGAAGCAGTTCAAAACGCTATACT
EST: gi|67507705|gb|BJ940585.1|BJ940585
EST:     ACAGTTAATCGTGTCACAATTTTGACTGACAAGTTTGGATCACCCAAAGG                         GTATGCGTACGTTGAATTTTTGGAGGTCGAAGCAGTTCAAAACGCTATACT
genomic: ACAGTTAATCGTGTCACAATTTTGACTGACAAGTTTGGATCACCCAAAGGgtaatattcc ... ttgacatcagGTATGCGTACGTTGAATTTTTGGAGGTCGAAGCAGTTCAAAACGCTATACT
EST: gi|67578551|gb|BJ950718.1|BJ950718
EST:     ACAGTTAATCGTGTCACAATTTTGACTGACAAGTTTGGATCACCCAAAGG                         GTATGCGTACGTTGAATTTTTGGAGGTCGAAGCAGTTCAAAACGCTATACT
genomic: ACAGTTAATCGTGTCACAATTTTGACTGACAAGTTTGGATCACCCAAAGGgtaatattcc ... ttgacatcagGTATGCGTACGTTGAATTTTTGGAGGTCGAAGCAGTTCAAAACGCTATACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatacgcaaaagatggatcatgttcggtatctgacctcatgcttcttgacatcagGTATGCGTACGTTGAATTTTTGGAGGTCGAAGCAGTTCAAAACGCTATACTTCTTAGTGAATCTGAGTTGCATAATCGTCCAATTAAG
                                           tcttgac  putative branch site (score: 3)
                                       tgcttctt  CT-rich tract
       aaaagat  TA-rich tract