1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tctgtggcggtttgaatcgattgaatagcctataaaagatatttgaaaagtaggaattttttggagtaggtgacttacaagtgctacatgtttattctagGAACGAGGCGAACCTGTGCCCCCCGAGGATTCCTTGGATATTGCCAGGAGGGTGAAAGAAATGTATTGCTACACATGTGCTGATATTGCGAAG
species | Physcomitrella patens |
transcript | PP1S85_160V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCCTGTCGCAGGCCGGGATCTCTCTAATTTCGTTCAACAGCTAATGCGA GAACGAGGCGAACCTGTGCCCEST: gi|208359135|gb|DC930467.1|DC930467
genomic: TTCCTGTCGCAGGCCGGGATCTCTCTAATTTCGTTCAACAGCTAATGCGAgtagcagcca ... tttattctagGAACGAGGCGAACCTGTGCCC
EST: TTCCTGTCGCAGGCCGGGATCTCTCTAATTTCGTTCAACAGCTAATGCGA GAACGAGGCGAACCTGTGCCCCC-GAGGATEST: gi|100365851|gb|BY967178.1|BY967178
genomic: TTCCTGTCGCAGGCCGGGATCTCTCTAATTTCGTTCAACAGCTAATGCGAgtagcagcca ... tttattctagGAACGAGGCGAACCTGTGCCCCCCGAGGAT
EST: TTCCTGTCGCAGGCCGGGATCTCTCTAATTTCGTTCAACAGCTAATGCGA GAACGAGGCGAACCTGTGCCCCCCGAGGAT-CCNTTGGATATTGCCAGGAG
genomic: TTCCTGTCGCAGGCCGGGATCTCTCTAATTTCGTTCAACAGCTAATGCGAgtagcagcca ... tttattctagGAACGAGGCGAACCTGTGCCCCCCGAGGATTCC-TTGGATATTGCCAGGAG
aaaagtaggaattttttggagtaggtgacttacaagtgctacatgtttattctagGAACGAGGCGAACCTGTGCCCCCCGAGGATTCCTTGGATATTGCCAGGAGGGTGAAAGAAATGTATTGCTACACATGTGCTGATATTGCGAAG
gacttac putative branch site (score: 7)
tttattct putative PPT
aatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtggcggtttgaatcgattgaatagcctataaaagatatttgaaaagtaggaattttttggagtaggtgacttacaagtgctacatgtttattctagGAACGAGGCGAACCTGTGCCCCCCGAGGATTCCTTGGATATTGCCAGGAGGGTGAAAGAAATGTATTGCTACACATGTGCTGATATTGCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctaca