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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA

Basic information

species Physcomitrella patens
transcript PP1S81_198V6.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os03g59060.2 (Oryza sativa), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                                          |   | ||  ||  |    || | | |  ||| | |||     | | ||  |  |   |  | |    ||||||||        ||   | |    |   |||| ||||| || || ||||| |||||||||||||| |||||||||||||||||||| ||||||||||  || 
-------------------------------------------------------------------------gtatcagttgtattttcctgttcgttgtcccctttgcat--atcttgagtccatcaaacttcaaatatatttatgct--------ttctcttcactttaccagTGCCCAGATACAAACTACTTGTTTATGGGAGATTACGTGGATCGTGGTTATTATTCTGTTGAAACTGTCACG

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os10g27050.1 (Oryza sativa), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttat--gctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                                               | ||||||    | ||||| ||    |  |      || | |  || |    ||||   ||  ||||   ||||||    ||||  | |    |   |||||||||| || ||||| || ||||||||||||||||| |||||||| || ||||| ||||| |||| ||||
-----------------------------------------------------------------------------gtactcaatc----cattggcattagttttgtttctttctgctctctttggtctttgtttcatgctttaaaagctgacatttgttttgtactgtttaccagTGTCCAGATACAAATTATTTGTTTATGGGAGATTATGTAGATCGTGGCTACTATTCTGTTGAGACTGTTACA

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os03g07150.1 (Oryza sativa), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatg-tccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                                     | |  ||   ||| | |  || | |    ||||||  | ||| |    ||||   ||    ||||  ||| || || ||  |   ||   ||  |||  ||     |||| ||||| || ||||| ||||||||||| ||||||||||||||||| ||||| || ||||| |||| ||| 
--------------------------------------------------------------------gtactatttgcatttacttttgctaccatactttgaaatcttcct----ttcgttattctgttcttaaaga-tacttaata-tatttgttcttctttgtttc-----agTGCCCAGATACTAATTATTTATTTATGGGGGATTATGTGGATCGTGGCTATTACTCTGTTGAGACTGTTACT

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G420926_T01 (Zea mays), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcg-cgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                          || || |||   || ||  |    ||| | |||  |      || || |||||| |   |  || ||  |  |    ||     | ||  | |  | | || |  ||   ||    |||||| ||  ||    | |||| ||       |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||||  || 
--------------------------gtaatgact---atgttgactcaactttgcttcttttt----tttcccttgaaaatttgttctgcccaagattgaagcc-----accatttccatcctctaatccctgccag----ttttattct--ct----tctgtttcc-------agTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTAGATCGTGGCTACTATTCTGTTGAGACTGTCACT

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G112793_T01 (Zea mays), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgat---agTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                            |  || | ||    | ||  || | | || |||    | || |  | |     | |   |  |  ||   |   |   ||  | ||  |    | |  ||| ||  ||| || |   ||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| ||||| ||||  || 
---------------------------------------------------------gtaccaactattttgactcgac-tttacttatttccccc-ccttaaagtatggtctacccaagattgaagccaccatttccatcctctaatccctgtcatttttattctctcctgtttccagTGTCCAGACACCAATTACTTATTTATGGGGGATTATGTAGATCGTGGCTACTATTCTGTTGAGACTGTCACT

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G382077_T01 (Zea mays), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                               || || || | | |||   | |   |||||    |  || || ||     |||||  || || ||  |||   | |||   ||  |  |  |  |  ||    |||     |||||||  |     ||||||||||| || ||||| || |||||||| ||||||||||||||||| ||||| || ||||| || |  || 
-----------------------------------------------gtactcag-tgcactgcataat---ctttg----tgcattatatct----ctttgcacttttgat--gctattcattt--cattctccaagagctgata----gaccattctttgttgttt---actagTGTCCAGATACAAATTATTTGTTTATGGGTGATTATGTGGATCGTGGCTATTACTCTGTTGAGACAGTAACG

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G108355_T01 (Zea mays), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                                     | |||     | |   |  |||| || ||||     |  ||  |   || |     || | | ||| |||  ||   |      ||||  || |  | || |   |||||||||| || || ||||| ||||||||||||||||| || |||||||| || || || |||||||  |||
--------------------------------------------------------------------gtacctc----actagtttctgtcatttgcttctgtttaatctccgatttagta---aggaacatgttgaaatttcagtatc--ttgaaactt-tcacttc-taccagTGTCCAGATACGAACTACTTGTTTATGGGAGATTATGTTGACCGTGGTTACTACTCTGTCGAAACTGTCACA

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G062394_T01 (Zea mays), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                                                         || | |  || |   ||||||||  |||||  ||    | |||  |  ||||    |   ||    || |||| |   |      |||||||||| || || ||| | ||||||||||||||||| || |||||||| || || || |||||||  |||
-----------------------------------------------------------------------------------------gtacctcactattttctgttcatttgcttc-tgtcacttttctgatttaataaagaaaa-tgttaaaattttgatattttac--cagTGTCCAGATACGAACTACCTGTTTATGGGAGATTATGTTGACCGTGGTTACTACTCTGTCGAAACTGTCACA

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA05G28790.2 (Glycine max), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttg-aaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgt-gatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                                 |  |  || ||| | ||| ||  || |  ||   |||  | |     | || ||    | | | | ||  |    | ||  || |||| |   |||       | || | ||||||||||| || |||||||| ||||||||||||||||| |||||||| |||||||| |||||||||| ||| 
-----------------------------------------------------------------atctcacccttgcatatttaaatatattttt---ttttgctt-----ttag-ttgaaatatggaacctctt----tgttaaatactgattcttgttaccatttttgttggtagTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTTGATCGTGGCTATTATTCTGTTGAAACTGTTACG

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA02G26650.1 (Glycine max), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattt---tatgctgactga-agtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                                             ||| | || | | |  |  |    |   | |   |    ||    | |  ||  |||  || | |||   ||||    || | | ||||||   |  | | |||||||||| || |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||  |||
----------------------------------------------------------------------------caaaatgaacctttttgt--gacaaggtttctgtttttattttttatattatactttgctgattgtttagctatggaatctaagaatttgttttgt--ttacagTGTCCAGATACTAATTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAAACTGTAACA

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA09G15900.1 (Glycine max), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattt---tatgctgactgaagtttgttgcctcgtg-atagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                                              || | || | | |  |  | |  |   | |   |  | ||    | |  ||  |||  || |||||   ||||    || |   |  |||  | ||    |||||||||| || |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||  |||
------------------------------------------------------------------------------aaatgaacctttttgt--gataaggtttctgtttttgttttttatattatactttgctgattatttagctatggaatctaagaatatttgttttgtttgcagTGTCCAGATACTAATTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAAACTGTAACA

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA08G11940.1 (Glycine max), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttg-aaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                                ||  |   | ||| | ||| ||  || |  |||  | |     ||| |  |   | |    |      ||||  |||| |  || ||   |    ||| |||     || ||||||||||| || |||||||| ||||||||||||||||| |||||||| |||||||| || ||||||| ||| 
--------------------------------------------------------------agcatctcatccttgcatatttaaatatttttttgcttcta----gttga--aatatggaacct----ctttgttaaatactg-attcttgttacctttttttgt----tggtagTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTTGATCGTGGCTATTATTCTGTCGAAACTGTTACG

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA19G39170.1 (Glycine max), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgttta-gtatcttgtagaatattt---tatgctgactgaagtttgttgcctcgtg-atagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                                         ||||||| |  || ||||       ||||         | ||||||  | | |  ||| ||   ||||||||   ||||    || ||  |   ||  |  |    |||||||||| || || ||||| |||||||| ||||||||||| || ||||||||||||||||| ||||   | 
------------------------------------------------------------------------ttttgaaaatgtattatgtgaaatattttg---------tgagcttctggataatatatgtttccgaatatttaggtatggattctaaatatacctgttttatttgcagTGTCCAGATACTAACTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAGACTGTATCG

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA03G36510.1 (Glycine max), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgttta-gtatcttgtagaatattttatgctga---ctgaagtttgttgcctcgtg-atagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                                         | ||||| |  || ||||       ||||         ||||||||  | | |  | | |||  || |||||     ||    || ||  |   ||  | ||    |||||||||| || || ||||| |||||||| ||||||||||| || ||||||||||||||||| ||||   ||
------------------------------------------------------------------------ttctgaaaatgtattatgtgaaatattttg---------tcagcttctggataatattttttgctgagtatttaggaatggattctaaatatacctgttttgtttgcagTGTCCAGATACTAACTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAGACTGTGTCA

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: AT2G42500.3 (Arabidopsis thaliana), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                                            | |        |||       || | |  | | ||  ||||   |   |||  |||   |    || |||    |  | || ||| |  | |  |   |||| || || ||||||||| | ||||||||||| |||||||| |||||||||||||| |||||||||| ||| 
----------------------------------------------------------------------------gtatagggggaatggtaacatctataaaatatacag-agctctacaaatagc-tctacca----atcttacaaagTATTAATTTTCT--CTTTTTTGCAGTGCCCTGATACCAATTACCTGTTTATGGGAGACTATGTGGACCGTGGTTATTATTCTGTTGAAACTGTTACG

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: AT2G42500.2 (Arabidopsis thaliana), 3'ss of exon 1
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                                    || || |  |     |||  |  | |   || | |  | | ||  ||||   |   |||  |||   |    || |||    |  | || ||| |  | |  |   |||| || || ||||||||| | ||||||||||| |||||||| |||||||||||||| |||||||||| ||| 
-----------------------------------------------------------------gcttttccgtatagggggaatggtaacat---ctataaaatatacag-agctctacaaatagc-tctacca----atcttacaaagtattaattttct--cttttttgcagTGCCCTGATACCAATTACCTGTTTATGGGAGACTATGTGGACCGTGGTTATTATTCTGTTGAAACTGTTACG

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: AT2G42500.1 (Arabidopsis thaliana), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                                                                 || | |  | | ||  ||||   |   |||  |||   |    || |||    |  | || ||| |  | |  |   |||| || || ||||||||| | ||||||||||| |||||||| |||||||||||||| |||||||||| ||| 
------------------------------------------------------------------------------------------gtaacatctataaaatatacag-agctctacaaatagc-tctacca----atcttacaaagtattaattttct--cttttttgcagTGCCCTGATACCAATTACCTGTTTATGGGAGACTATGTGGACCGTGGTTATTATTCTGTTGAAACTGTTACG

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: Vv13s0156g00060.t01 (Vitis vinifera), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcg--tgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                                  |||| | |||    ||     |   | |  | ||  | |||||  ||  |||   |||     ||||  || ||        ||   ||| || | || |||    || ||||||||||| || |||||||| || ||||||||||||||||||||||| |||||||||||||||||||  || 
------------------------------------------------------------------agtt-ctttttttttttttctacaccatctgtttccatctgtttttc--ctttctgttc----tctttaagtatga-----acttgatgatgtctttttccttaattgttagTGTCCAGATACGAATTACTTGTTCATGGGAGATTATGTGGATCGTGGGTATTATTCAGTTGAAACTGTCACG

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: Vv06s0004g00830.t01 (Vitis vinifera), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                             ||| ||  ||  | | || ||   |  | |  ||   |   |  ||||    |  ||| |  | |  ||  ||||      |||||| |  |  || ||| |||  |    | |||||||||| || |||||||| ||||||||||||||||| || |||||||||||||| ||||||||||  || 
-------------------------------------------------------------tgaaaaaatgtatattaatttt--ttctattatttcttcatatttgttttatatgttctcactaataat--tgta------tttatggttgc--aattttcttggtt---aacagTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTCGACCGTGGTTATTATTCTGTTGAAACTGTCACG

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ32273 (Selaginella moellendorffii), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagt-tgcctttgaaattcaatcatgtccttggctttgacctgttcatc---agcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                                  ||| ||  | ||   | |    |   ||| ||  | |   ||| | |    ||    | ||||   | |||   ||  |  || || |   | |  | |||     | |  ||||||||||| || || ||||| |||||||| ||||||||||||||||| || || || || || ||||| || 
---------------------------------------------------------------gtgagtgtgtatatgttttccttctacaccctcggagtcgttgtgtgcgtttcaagtcctgagttttccaccttactgaccaggtt-tgatctttaatctctgt-----ctttgtagTGTCCAGATACAAACTACTTGTTTATGGGCGATTATGTGGATCGTGGGTACTACTCCGTCGAGACTGCAACT

upper sequence: PP1S81_198V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ16562 (Selaginella moellendorffii), 3'ss of exon 3
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                                                       ||  |   | | |||  | ||    ||||  |  |   | |  | ||  |  ||||  ||    | ||||     |||    |  |  || || |   | |  | |||     | |  ||||||||||| || || ||||| |||||||| ||||||||||||||||| || || || || || ||||| || 
-------------------------------------------------------gtgagtgtatatgttttccttc---ttcaccctcggagtcg-ttgtgtacgtttca--agtcctgagttttccgccttactcaccaggtt-tgatctttaatctctgt-----ctttgtagTGTCCAGATACAAACTACTTGTTTATGGGCGATTATGTGGATCGTGGGTACTACTCCGTCGAGACTGCAACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67575300|gb|BJ948124.1|BJ948124
EST:     TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATG                         TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
genomic: TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATGgtcaggcctc ... ctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
EST: gi|18374787|gb|BJ206365.1|BJ206365
EST:     TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATG                         TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
genomic: TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATGgtcaggcctc ... ctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
EST: gi|18372424|gb|BJ204026.1|BJ204026
EST:     TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATG                         TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
genomic: TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATGgtcaggcctc ... ctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
EST: gi|100367133|gb|BY984820.1|BY984820
EST:     TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATG                         TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
genomic: TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATGgtcaggcctc ... ctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
EST: gi|100403358|gb|BY991163.1|BY991163
EST:     TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATG                         TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
genomic: TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATGgtcaggcctc ... ctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
EST: gi|208364480|gb|DC930870.1|DC930870
EST:     TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATG                         TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
genomic: TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATGgtcaggcctc ... ctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
EST: gi|208359936|gb|DC938957.1|DC938957
EST:     TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATG                         TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTAGTTAT
genomic: TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATGgtcaggcctc ... ctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
EST: gi|100371567|gb|BY968043.1|BY968043
EST:     TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATG                         TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
genomic: TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATGgtcaggcctc ... ctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
EST: gi|208363782|gb|DC943239.1|DC943239
EST:     TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATG                         TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
genomic: TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATGgtcaggcctc ... ctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
EST: gi|162157762|gb|FC335476.1|FC335476
EST:     TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATG                         TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
genomic: TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATGgtcaggcctc ... ctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
EST: gi|162155831|gb|FC331860.1|FC331860
EST:     TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATG                         TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
genomic: TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATGgtcaggcctc ... ctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
EST: gi|208358426|gb|DC930558.1|DC930558
EST:     TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATG                         TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
genomic: TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATGgtcaggcctc ... ctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
EST: gi|162169399|gb|FC345755.1|FC345755
EST:     TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATG                         TGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT
genomic: TTCATGGCCAGTTTCATGATCTTGCTGAACTCTTCCGAATTGGAGGAATGgtcaggcctc ... ctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA
                         tgctgac  putative branch site (score: 2)
                                         ttgcctc  putative PPT
          ttgtagaatattttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcaggcctcgttcaaccacattcttgttattacttaaattttagcagtccttaggttcgctgacaagttgcctttgaaattcaatcatgtccttggctttgacctgttcatcagcttcgcgtttagtatcttgtagaatattttatgctgactgaagtttgttgcctcgtgatagTGTCCAGACACCAATTACTTATTTATGGGAGATTATGTGGATCGTGGTTATTATTCAGTTGAAACTGCTACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT