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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcgtttttatgtttattgaactatcaaacaggaacatgaaagcttcggttttcatgataagtatgatgaactcaagggggatcatgtatgcactggcagGTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTCAGACGTGCAGGACCTCGTGATAAG

Basic information

species Physcomitrella patens
transcript PP1S81_165V6.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18344845|gb|BJ176886.1|BJ176886
EST:     GCAGTATTTTATCGAGGACACAGATGTCGTTGCCAAAGAT                         GTGGTAGTAAATATCAACACTGCTGGGGGATGGTGTTCATTTCAGACGTGC
genomic: GCAGTATTTTATCGAGGACACAGATGTCGTTGCCAAAGATgtaagctcgg ... gcactggcagGTGGTAGTAAATATCAACACTGCTGGGG-ATGGTGTTCATTTCAGACGTGC
EST: gi|18361584|gb|BJ193650.1|BJ193650
EST:     GCAGTATTTTATCGAGGACACAGATGTCGTTGCCAAAGAT                         GTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTCAGACGTGCA
genomic: GCAGTATTTTATCGAGGACACAGATGTCGTTGCCAAAGATgtaagctcgg ... gcactggcagGTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTCAGACGTGCA
EST: gi|67569904|gb|BJ942728.1|BJ942728
EST:     GCAGTATTTTATCGAGGACACAGATGTCGTTGCCAAAGAT                         GTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTCAGACGTGCA
genomic: GCAGTATTTTATCGAGGACACAGATGTCGTTGCCAAAGATgtaagctcgg ... gcactggcagGTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTCAGACGTGCA
EST: gi|18343450|gb|BJ175488.1|BJ175488
EST:     GCAGTATTTTATCGAGGACACAGATGTCGTTGCCAAAGAT                         GTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTCAGACGTGCA
genomic: GCAGTATTTTATCGAGGACACAGATGTCGTTGCCAAAGATgtaagctcgg ... gcactggcagGTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTCAGACGTGCA
EST: gi|18370295|gb|BJ201897.1|BJ201897
EST:     GCAGTATTTTATCGAGGACACAGATGTCGTTGCCAAAGAT                         GTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTC
genomic: GCAGTATTTTATCGAGGACACAGATGTCGTTGCCAAAGATgtaagctcgg ... gcactggcagGTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTC
EST: gi|162199151|gb|FC374597.1|FC374597
EST:     GCAGTATTTTATCGAGGACACAGATGTCGTTGCCAAAGAT                         GTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTCAGACGTGCA
genomic: GCAGTATTTTATCGAGGACACAGATGTCGTTGCCAAAGATgtaagctcgg ... gcactggcagGTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTCAGACGTGCA
EST: gi|100387189|gb|BY970333.1|BY970333
EST:     GCAGTATTTTATCGAGGACACAGATGTCGTTGCCAAAGAT                         GTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTCAGACGTGCA
genomic: GCAGTATTTTATCGAGGACACAGATGTCGTTGCCAAAGATgtaagctcgg ... gcactggcagGTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTCAGACGTGCA
EST: gi|18343427|gb|BJ175465.1|BJ175465
EST:     GCAGTATTTTATCGAGGACACAGATGTCGTTGCCAAAGAT                         GTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTCAGACGTGCA
genomic: GCAGTATTTTATCGAGGACACAGATGTCGTTGCCAAAGATgtaagctcgg ... gcactggcagGTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTCAGACGTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcggttttcatgataagtatgatgaactcaagggggatcatgtatgcactggcagGTGGTAGTAAATATCAACACTGCTGGGGATGGTGTTCATTTCAGACGTGCAGGACCTCGTGATAAG
            ataagtat  TA-rich tract