1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaattttctacgtttgtgcactgttaactgttttgactgctttgatactagtttcataagttggaatagaggatgtgaaatgatgaattagcaaagtgaggcactcaaccatttgattgaagaaattcatgggataatttggtgacctttcgcagGATCCTCCTCGAGAGGAAGTGCATAGTGCGATTCAAGACTGCTCAGAAGCGGGAATTCGAGTGATTGTGATCACGGGAGATAACAAGAACACTGCTGAAT
species | Physcomitrella patens |
transcript | PP1S80_36V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCTGGATTGAGG GATCCTCCTCGAGAGGAAGTGCATATTGCGATTCAAGACTGCTCAGAAGCGEST: gi|162257551|gb|FC433685.1|FC433685
genomic: GGCTGGATTGAGGgtaaattttc ... cctttcgcagGATCCTCCTCGAGAGGAAGTGCATAGTGCGATTCAAGACTGCTCAGAAGCG
EST: CATTTTCGTAGGCATGGCTGGATTGAGG GATCCTCCTCGAGAGGAAGTGCATAGTGCGATTCAAGACTGCTCAGAAGCG
genomic: CATTTTCGTAGGCATGGCTGGATTGAGGgtaaattttc ... cctttcgcagGATCCTCCTCGAGAGGAAGTGCATAGTGCGATTCAAGACTGCTCAGAAGCG
gcactcaaccatttgattgaagaaattcatgggataatttggtgacctttcgcagGATCCTCCTCGAGAGGAAGTGCATAGTGCGATTCAAGACTGCTCAGAAGCGGGAATTCGAGTGATTGTGATCACGGGAGATAACAAGAACACTGCTGAAT
atttgat putative branch site (score: 5)
cctttcgc putative PPT
ataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattttctacgtttgtgcactgttaactgttttgactgctttgatactagtttcataagttggaatagaggatgtgaaatgatgaattagcaaagtgaggcactcaaccatttgattgaagaaattcatgggataatttggtgacctttcgcagGATCCTCCTCGAGAGGAAGTGCATAGTGCGATTCAAGACTGCTCAGAAGCGGGAATTCGAGTGATTGTGATCACGGGAGATAACAAGAACACTGCTGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC