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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgttttgtaactagtagaatgtgctgttatgatacttcattcctttcacttataatcccaaaccatggtggatgaatttattaggtctcatttcatacatttatgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCTTTTGTTCCCCACAAGGATGAGTACTACCTTTCAATTGTATCTGATCGTC

Basic information

species Physcomitrella patens
transcript PP1S7_156V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S7_156V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: Vv14s0060g00550.t01 (Vitis vinifera), 3'ss of exon 2
gtgagtgttttgtaactagtagaatgtgctgttatgatacttcattcctttcacttataatcccaaaccatggtggatgaatttattaggtctcatttcatacattta--tgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCTTTTGTTCCCCACAAGGATGAGTACTACCTTTCAATTGTATCTGATCGTC
                                     |  |  || | |   | |||    ||  ||   |||   |  |||| |||   | | |     |  |||    | |    |||| |||||| |||||  ||| |  || || |||||||||||||| ||||| |||||||||||  |  | ||||| |||||||| |||||||||||| | |
------------------------------------gtgatgaatgcatcaaattta----ccagaattttggc--actaattcatttc-tgttaacatgtgaattggattctctttagGTTGAGATGGGTGGTTGCAAGGCACCAATAACCACTTTTATTGTTGAACCGTTTGTTCCCCATGACCAAGAGTATTACCTTTCGATTGTATCTGATAGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67575552|gb|BJ948376.1|BJ948376
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100446463|gb|CJ970762.1|CJ970762
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208390242|gb|DC942007.1|DC942007
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCC
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|18370458|gb|BJ202060.1|BJ202060
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100402225|gb|BY973279.1|BY973279
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|162223608|gb|FC399420.1|FC399420
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100449226|gb|CJ973525.1|CJ973525
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100450295|gb|CJ974191.1|CJ974191
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100353250|gb|BY964711.1|BY964711
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|67716523|gb|BJ966783.1|BJ966783
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|162270682|gb|FC446295.1|FC446295
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208357950|gb|DC943062.1|DC943062
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100412106|gb|BY956417.1|BY956417
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208354657|gb|DC934301.1|DC934301
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208360044|gb|DC934933.1|DC934933
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGACGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|162274023|gb|FC450370.1|FC450370
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100421795|gb|BY993647.1|BY993647
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208363910|gb|DC939559.1|DC939559
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100424973|gb|BY976908.1|BY976908
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208352142|gb|DC906273.1|DC906273
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|18361927|gb|BJ193994.1|BJ193994
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGT-CCAAAGGTCCGATTACCACTTTTATTGTGGA
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGA
EST: gi|100392847|gb|BY971911.1|BY971911
EST:     TAGATTTAGCAGGTGTGGAAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100447685|gb|CJ971984.1|CJ971984
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100383551|gb|BY950335.1|BY950335
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100388158|gb|BY988631.1|BY988631
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100437573|gb|BY979720.1|BY979720
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208390935|gb|DC942239.1|DC942239
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208361725|gb|DC934965.1|DC934965
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100391526|gb|BY971701.1|BY971701
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100405539|gb|BY973727.1|BY973727
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208346716|gb|DC913362.1|DC913362
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|67716406|gb|BJ966666.1|BJ966666
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208375943|gb|DC914410.1|DC914410
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100386816|gb|BY988085.1|BY988085
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208391473|gb|DC937621.1|DC937621
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208372285|gb|DC936443.1|DC936443
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208353244|gb|DC913918.1|DC913918
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100448570|gb|CJ972869.1|CJ972869
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208393881|gb|DC938464.1|DC938464
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208358324|gb|DC930709.1|DC930709
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|67578178|gb|BJ950345.1|BJ950345
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|18366063|gb|BJ198141.1|BJ198141
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100420571|gb|BY976074.1|BY976074
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100384726|gb|BY950716.1|BY950716
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100360822|gb|BY965918.1|BY965918
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|67704574|gb|BJ964807.1|BJ964807
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|162203673|gb|FC378548.1|FC378548
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100383470|gb|BY950254.1|BY950254
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208386794|gb|DC937186.1|DC937186
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100405432|gb|BY955522.1|BY955522
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|18331338|gb|BJ163348.1|BJ163348
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208391423|gb|DC937571.1|DC937571
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACTACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208366691|gb|DC931348.1|DC931348
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|67508690|gb|BJ941551.1|BJ941551
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208355278|gb|DC929767.1|DC929767
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|208355422|gb|DC929841.1|DC929841
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
EST: gi|100355867|gb|BY946078.1|BY946078
EST:     TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAG                         GTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT
genomic: TAGATTTAGCAGGTGTGGTAGCTTTCGTGAAGGAGCGTTTGGGTAAAGAGgtgagtgttt ... atgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaaaccatggtggatgaatttattaggtctcatttcatacatttatgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCTTTTGTTCCCCACAAGGATGAGTACTACCTTTCAATTGTATCTGATCGTC
                                atttcatacatttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtgttttgtaactagtagaatgtgctgttatgatacttcattcctttcacttataatcccaaaccatggtggatgaatttattaggtctcatttcatacatttatgttcgcagGTCGAGATGAGTGGTACCAAAGGTCCGATTACCACTTTTATTGTGGAACCTTTTGTTCCCCACAAGGATGAGTACTACCTTTCAATTGTATCTGATCGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG