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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtggacgtcttgcacatcagctttagggcattggagattcctaacagtctgcacgttcctttgttttgtcagtcccctcacctaccaatacgatagctcatggagctgcctgtttgttattttatggacagGTTGGTGGTACAGGCCGGACTACATCATAAACCAGTTGAACATCAACTCTGCCATCACCTCGCCTGCGCATGGGGAGGCGCTTCCAGTGAATTTCTCAAC

Basic information

species Physcomitrella patens
transcript PP1S79_76V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18369179|gb|BJ201264.1|BJ201264
EST:     TAACCGAGTGCTGCCCTCCCACGTTGATGCCGAGACTGCCAAAGCTGAAG                         GTTGGTGGTACAGGCCGGACTACATCATAAACCAGTTGAACATCAACTCTG
genomic: TAACCGAGTGCTGCCCTCCCACGTTGATGCCGAGACTGCCAAAGCTGAAGgtacgtggac ... ttatggacagGTTGGTGGTACAGGCCGGACTACATCATAAACCAGTTGAACATCAACTCTG
EST: gi|18361546|gb|BJ193612.1|BJ193612
EST:     TAACCGAGTGCTGCCCTCCCACGTTGATGCCGAGACTGCCAAAGCTGAAG                         GTTGGTGGTACAGGCCGGACTACATCATAAACCAGTTGAACATCAACTCTG
genomic: TAACCGAGTGCTGCCCTCCCACGTTGATGCCGAGACTGCCAAAGCTGAAGgtacgtggac ... ttatggacagGTTGGTGGTACAGGCCGGACTACATCATAAACCAGTTGAACATCAACTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcacctaccaatacgatagctcatggagctgcctgtttgttattttatggacagGTTGGTGGTACAGGCCGGACTACATCATAAACCAGTTGAACATCAACTCTGCCATCACCTCGCCTGCGCATGGGGAGGCGCTTCCAGTGAATTTCTCAAC
 ccctcac  putative branch site (score: 3)
                                        ttatttt  putative PPT
                                  tgtttgttattttat  TA-rich tract