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gtcagcttcaacttcaattttcctttttgatagagaaacgataagtgactatttttgaggttcttaatcaaccagattggttaacaattacagatgaaatagaaagtggatcttctctttgaagctttcatacttttttatccactgagcatcaacatgcttggtcccctttgcagGACACTTCAATGGCAAGTGTGTATTATGAGTTGCTGTCTGTGCTGCATCTTTTAGGAGTGCTGGCTTTACAAGAAGCCAATATGTGCTTGACACCAAAGC
species | Physcomitrella patens |
transcript | PP1S79_62V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCAAATCGGTTGTTGAATTTCCCTGGACAAATGTGGTGAACGAGAAAAAG GACACTTCAATGGCAAGTGTGTATTATGAGTTGCTGCCTGTGCTGCATCTTEST: gi|162158002|gb|FC334429.1|FC334429
genomic: TCAATTCGGTTGTTGAATTTCCCTGGACAAATGTGGTGGACGAGAAAAAGgtcagcttca ... ccctttgcagGACACTTCAATGGCAAGTGTGTATTATGAGTTGCTGTCTGTGCTGCATCTT
EST: TCAATTCGGTTGTTGAATTTCCCTGGACAAATGTGGTGGACGAGAAAAAG GACACTTCAATGGCAAGTGTGTATTATGAGTTGCTGTCTGTGCTGCATCTT
genomic: TCAATTCGGTTGTTGAATTTCCCTGGACAAATGTGGTGGACGAGAAAAAGgtcagcttca ... ccctttgcagGACACTTCAATGGCAAGTGTGTATTATGAGTTGCTGTCTGTGCTGCATCTT
aagctttcatacttttttatccactgagcatcaacatgcttggtcccctttgcagGACACTTCAATGGCAAGTGTGTATTATGAGTTGCTGTCTGTGCTGCATCTTTTAGGAGTGCTGGCTTTACAAGAAGCCAATATGTGCTTGACACCAAAGC
tcccctttgc CT-rich tract
ttcatacttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcttcaacttcaattttcctttttgatagagaaacgataagtgactatttttgaggttcttaatcaaccagattggttaacaattacagatgaaatagaaagtggatcttctctttgaagctttcatacttttttatccactgagcatcaacatgcttggtcccctttgcagGACACTTCAATGGCAAGTGTGTATTATGAGTTGCTGTCTGTGCTGCATCTTTTAGGAGTGCTGGCTTTACAAGAAGCCAATATGTGCTTGACACCAAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC