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gtgcgtagtttctcattttcctctctctctttaaaatataacttgtctgtattctttttcataaacctttattgattgagatttttgctctgttcatgaatagttaggtatattgacacctctacacaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAG
species | Physcomitrella patens |
transcript | PP1S79_54V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTEST: gi|162182305|gb|FC357176.1|FC357176
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTT
EST: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTEST: gi|18369273|gb|BJ201358.1|BJ201358
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTT
EST: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTEST: gi|100385980|gb|BY951174.1|BY951174
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTT
EST: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTEST: gi|18365567|gb|BJ197644.1|BJ197644
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTT
EST: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTEST: gi|18362808|gb|BJ194880.1|BJ194880
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTT
EST: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTEST: gi|208358811|gb|DC935197.1|DC935197
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTT
EST: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTEST: gi|100428360|gb|BY977766.1|BY977766
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTT
EST: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGAAAGACTGTGTCNNNNNNNGAGCTCTCGCAGCTTEST: gi|18361307|gb|BJ193373.1|BJ193373
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAA-GAGCTCTCGCAGCTT
EST: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTEST: gi|18374142|gb|BJ205720.1|BJ205720
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTT
EST: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTEST: gi|18369196|gb|BJ201281.1|BJ201281
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTT
EST: AATAAGTACAGTGAANGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGAAAGACTGTGTCAAAEST: gi|208379665|gb|DC903720.1|DC903720
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAA
EST: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTEST: gi|162155361|gb|FC331767.1|FC331767
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTT
EST: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTEST: gi|18356126|gb|BJ188185.1|BJ188185
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTT
EST: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGEST: gi|18366816|gb|BJ198896.1|BJ198896
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTG
EST: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTEST: gi|100392460|gb|BY953374.1|BY953374
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTT
EST: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGAAAGACTGTGTCNNNNNNNGAGCTCTCGCAGCTTEST: gi|18370401|gb|BJ202003.1|BJ202003
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAA-GAGCTCTCGCAGCTT
EST: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGA GTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTT
genomic: AATAAGTACAGTGAAGGTTACCCCGGTGCTCGCTATTACGGTGGCAACGAgtgcgtagtt ... acaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTT
atttttgctctgttcatgaatagttaggtatattgacacctctacacaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAG
tattgac putative branch site (score: 2)
aatagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtagtttctcattttcctctctctctttaaaatataacttgtctgtattctttttcataaacctttattgattgagatttttgctctgttcatgaatagttaggtatattgacacctctacacaaatgtagGTTCATTGACATGGCTGAAAGACTGTGTCAAAAAAGAGCTCTCGCAGCTTTCCGCCTCGATCCAGAGAAATGGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT