Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acacacctggtgtttatgttagcaggaattgtcgcatcgttgttgttactcggctggttccattttgagactgacattattctaatatccttatttgcagAGCCTGGTGAAGTCTTTCGAGGTTACCGACCTGCCAG

Basic information

species Physcomitrella patens
transcript PP1S79_180V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18345941|gb|BJ177984.1|BJ177984
EST:     TATCCAGCTTATATACCGGAAGTCTTCATATTTGGAACTACCAGAACCAG                         AGCCTGGTGAAGTCTTTCGAGGTTACCGACCTGCCAG
genomic: TATCCAGCTTATATACCGGAAGTCTTCATATTTGGAACTACCAGAACCAGgtatacacat ... ttatttgcagAGCCTGGTGAAGTCTTTCGAGGTTACCGACCTGCCAG
EST: gi|18374691|gb|BJ206269.1|BJ206269
EST:     TATCCAGCTTATATACCGGAAGTCTTCATATTTGGAACTACCAGAACCAG                         AGCCTGGTGAAGTCTTTCGAGGTTACCGACCTGCCAG
genomic: TATCCAGCTTATATACCGGAAGTCTTCATATTTGGAACTACCAGAACCAGgtatacacat ... ttatttgcagAGCCTGGTGAAGTCTTTCGAGGTTACCGACCTGCCAG
EST: gi|18366204|gb|BJ198282.1|BJ198282
EST:     ATCCAGCTTATATACCCGGAAGTCTTCATATTTGGAACTACCAGAACCAG                         AGCCTGGTGAAGTCTTTCGAGGTTACCGACCTGCCAG
genomic: ATCCAGCTTATATA-CCGGAAGTCTTCATATTTGGAACTACCAGAACCAGgtatacacat ... ttatttgcagAGCCTGGTGAAGTCTTTCGAGGTTACCGACCTGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactcggctggttccattttgagactgacattattctaatatccttatttgcagAGCCTGGTGAAGTCTTTCGAGGTTACCGACCTGCCAG
                                  ttctaat  putative branch site (score: 2)
                                          tccttattt  CT-rich tract
                              attattctaatatcct  TA-rich tract