Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acgtgttgcacgttttatgagcagtaatttgtccctgatactggatcgtatgcagcattgttttaagcatccatttaatagtagaatcgtgtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTTGATGAGATGATCCGCGAGGCTGATGTAGATGGTGATGGCCAGGTCAACT

Basic information

species Physcomitrella patens
transcript PP1S79_158V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S79_158V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ32870 (Selaginella moellendorffii), 3'ss of exon 3
acgtgttgcacgttttatgagcagtaatttgtccctgatactggatcgtatgcagcattgttttaagcatccatttaatagtagaatcgtgtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTTGATGAGATGATCCGCGAGGCTGATGTAGATGGTGATGGCCAGGTCAACT
                           | |||    || | |||||  |     |  ||||||   |  ||| |||      |      | |     ||| |  || ||||||||| ||| ||||||||||| ||||| ||||| ||||| || ||||||||||||||||||||  | || || || || || || ||||
--------------------------gtctgtgagagaca-tggattct---tggtcttgtttctcgtttcctttttgactgactggaatttcttcccagTTGAGGGACGTGATGATCAATCTGGGCGAGAAGCTGACCGACGAGGAGGTAGAAGAGATGATCCGCGAGGCTGACATGGACGGCGACGGTCACGTTAACT

upper sequence: PP1S79_158V6.3 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ14591 (Selaginella moellendorffii), 3'ss of exon 3
acgtgttgcacgttttatgagcagtaatttgtccctgatactggatcgtatgcagcattgttttaagcatccatttaatagtagaatcgtgtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTTGATGAGATGATCCGCGAGGCTGATGTAGATGGTGATGGCCAGGTCAACT
                           | |||    || | |||||  |     |  |||||||  |  ||| |||      |      | |     ||| |  || ||||||||| ||| ||||||||||| ||||| ||||| ||||| || ||||||||||||||||||||  | || || || || || || ||||
--------------------------gtctgtgagagaca-tggattct---tggtcttgtttttcgtttcctttttgactgactggaatttcttcccagTTGAGGGACGTGATGATCAATCTGGGCGAGAAGCTGACCGACGAGGAGGTAGAGGAGATGATCCGCGAGGCTGACATGGACGGCGACGGTCACGTTAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208375983|gb|DC906974.1|DC906974
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|18340724|gb|BJ172755.1|BJ172755
EST:     TTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: TTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162279550|gb|FC455328.1|FC455328
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162271952|gb|FC448370.1|FC448370
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|67692513|gb|BJ952746.1|BJ952746
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162163140|gb|FC340194.1|FC340194
EST:     AAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: AAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|67694904|gb|BJ955137.1|BJ955137
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|67698628|gb|BJ958861.1|BJ958861
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162227831|gb|FC403639.1|FC403639
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|208374214|gb|DC945260.1|DC945260
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|37835906|gb|BJ593918.1|BJ593918
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162249136|gb|FC420387.1|FC420387
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162215609|gb|FC391675.1|FC391675
EST:     ACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: ACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|67569257|gb|BJ942081.1|BJ942081
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|37842331|gb|BJ600339.1|BJ600339
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162256969|gb|FC433279.1|FC433279
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|208374946|gb|DC944769.1|DC944769
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCCGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|37827755|gb|BJ585767.1|BJ585767
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162277001|gb|FC453099.1|FC453099
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|208397052|gb|DC928895.1|DC928895
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|18339109|gb|BJ171135.1|BJ171135
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162279223|gb|FC455770.1|FC455770
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|208372675|gb|DC944640.1|DC944640
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162256968|gb|FC433278.1|FC433278
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162249135|gb|FC420386.1|FC420386
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162249065|gb|FC421187.1|FC421187
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162279222|gb|FC455769.1|FC455769
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162235070|gb|FC411205.1|FC411205
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162200572|gb|FC376767.1|FC376767
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162279551|gb|FC455329.1|FC455329
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|208352946|gb|DC926053.1|DC926053
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162152778|gb|FC329784.1|FC329784
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162273718|gb|FC449441.1|FC449441
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|37824355|gb|BJ582421.1|BJ582421
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|37833289|gb|BJ591301.1|BJ591301
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|67697386|gb|BJ957619.1|BJ957619
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162257078|gb|FC432817.1|FC432817
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162277269|gb|FC453699.1|FC453699
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|37839702|gb|BJ597710.1|BJ597710
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|208385346|gb|DC915146.1|DC915146
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|208397191|gb|DC920848.1|DC920848
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|37842115|gb|BJ600123.1|BJ600123
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162209601|gb|FC385905.1|FC385905
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162270506|gb|FC447601.1|FC447601
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162270492|gb|FC447600.1|FC447600
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATTTCCGCCGCAGAG                         TTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|67699019|gb|BJ959252.1|BJ959252
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|37820912|gb|BJ578978.1|BJ578978
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|37823079|gb|BJ581145.1|BJ581145
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|162262741|gb|FC439017.1|FC439017
EST:     CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
EST: gi|37824532|gb|BJ582598.1|BJ582598
EST:     CGTTTGAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAG                         CTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT
genomic: CGTTTAAAGTGTTCGACAAGGACCAGAATGGCTTCATCTCCGCCGCAGAGgttactctcc ... gtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtatgcagcattgttttaagcatccatttaatagtagaatcgtgtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTTGATGAGATGATCCGCGAGGCTGATGTAGATGGTGATGGCCAGGTCAACT
                           atttaat  putative branch site (score: 4)
                           atttaatagtagaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acgtgttgcacgttttatgagcagtaatttgtccctgatactggatcgtatgcagcattgttttaagcatccatttaatagtagaatcgtgtgaatacagCTCCGGCACGTGATGACCAACCTGGGCGAGAAACTGACAGACGAAGAGGTTGATGAGATGATCCGCGAGGCTGATGTAGATGGTGATGGCCAGGTCAACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- -tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - - tgcagca