1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgtatctcatatcattctgtaaaccttcactgtcctggaatttgtgtgtgtctatgagtgttggtatcatttctatgactatcgttctttgtttttttgttttctttcttgacaagagtagtctggaacttgcagCAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACGCCCCAGTGCTTGAG
species | Physcomitrella patens |
transcript | PP1S78_6V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTCGGAGGTGGGGCGGACAGTACTGGAGCTAGTATGGCTCGCCGACTCT CAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACGEST: gi|18329265|gb|BJ161271.1|BJ161271
genomic: AGTCGGAGGTGGGGCGGACAGTACTGGAGCTAGTATGGCTCGCCGACTCTgtatgtatct ... gaacttgcagCAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACG
EST: AGTCGGAGGTGGGGTG-ACAGTACTGGAGCTAGTATGGCTCGCCGACTCT CAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACGEST: gi|162201051|gb|FC378182.1|FC378182
genomic: AGTCGGAGGTGGGGCGGACAGTACTGGAGCTAGTATGGCTCGCCGACTCTgtatgtatct ... gaacttgcagCAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACG
EST: AGTCGGAGGTGGGGCGGACAGTACTGGAGCTAGTATGGCTCGCCGACTCT CAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACGEST: gi|162274901|gb|FC450552.1|FC450552
genomic: AGTCGGAGGTGGGGCGGACAGTACTGGAGCTAGTATGGCTCGCCGACTCTgtatgtatct ... gaacttgcagCAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACG
EST: AGTCGGAGGTGGGGCGGACAGTACTGGAGCTAGTATGGCTCGCCGACTCT CAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACGEST: gi|37825069|gb|BJ583135.1|BJ583135
genomic: AGTCGGAGGTGGGGCGGACAGTACTGGAGCTAGTATGGCTCGCCGACTCTgtatgtatct ... gaacttgcagCAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACG
EST: AGTCGGAGGTGGGGCGGACAGTACTGGAGCTAGTATGGCTCGCCGACTCT CAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACGEST: gi|18332695|gb|BJ164708.1|BJ164708
genomic: AGTCGGAGGTGGGGCGGACAGTACTGGAGCTAGTATGGCTCGCCGACTCTgtatgtatct ... gaacttgcagCAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACG
EST: AGTCGGAGGTGGGGTG-ACAGTACTGGAGCTAGTATGGCTCGCCGACTCT CAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACGEST: gi|162274902|gb|FC450553.1|FC450553
genomic: AGTCGGAGGTGGGGCGGACAGTACTGGAGCTAGTATGGCTCGCCGACTCTgtatgtatct ... gaacttgcagCAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACG
EST: AGTCGGAGGTGGGGCGGACAGTACTGGAGCTAGTATGGCTCGCCGACTCT CAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACG
genomic: AGTCGGAGGTGGGGCGGACAGTACTGGAGCTAGTATGGCTCGCCGACTCTgtatgtatct ... gaacttgcagCAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACG
atcgttctttgtttttttgttttctttcttgacaagagtagtctggaacttgcagCAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACGCCCCAGTGCTTGAG
tcttgac putative branch site (score: 3)
tttgtttttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatctcatatcattctgtaaaccttcactgtcctggaatttgtgtgtgtctatgagtgttggtatcatttctatgactatcgttctttgtttttttgttttctttcttgacaagagtagtctggaacttgcagCAATGAGGACTGGTTGGAGCATAGTATTGGCTTCCAATATTCCGTCCAACGCCCCAGTGCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA