1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatggcttgttcttctcatcttgcattcctccacctttcgtggataggatgatatactaatgctgacttgctgacagagtgttaatgtatatagtgcgaactgttctgatccctgtcctttccttacgaactaaccaaagcaagtggatctgacagTTTTTTGTGTTATTTTCAACAATAATCTCGACAACCCTTGAAGTGATCGCACTGGCTGCCTTACAAG
species | Physcomitrella patens |
transcript | PP1S78_54V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTATTTTTTCAGAGTATTTGAAAGGCAAATTGGGTCGAATAAATACTTG TTTTTTGTGTTATTTTTTCA-CA-TAATCTCGACAACCCTTTGA-GTGATCEST: gi|208346567|gb|DC916833.1|DC916833
genomic: TTTATTTTTTCAGAGTATTTGAAAGGCAAATTGGGTCGAATAAATACTTGgtatggcttg ... gatctgacagTTTTTTGTGTTATTTT--CAACAATAATCTCGACAACCCTT-GAAGTGATC
EST: GGTCGAATAAATACNTG -TTTTTGTGTTATTTTCAACAATAATCTCGACAACCCTTGAAGTGATCGCAEST: gi|37851035|gb|BJ609043.1|BJ609043
genomic: GGTCGAATAAATACTTGgtatggcttg ... gatctgacagTTTTTTGTGTTATTTTCAACAATAATCTCGACAACCCTTGAAGTGATCGCA
EST: TCAGAGTATTTGAAAGGCAAATTGGGTCGAATAAATACTNG NEST: gi|37851035|gb|BJ609043.1|BJ609043
genomic: TCAGAGTATTTGAAAGGCAAATTGGGTCGAATAAATACTTGgtatggcttg ... gatctgacag-
EST: TCAGAGTATTTGAAAGGCAAATTGGGTCGAATAAATACTNG NEST: gi|37842140|gb|BJ600148.1|BJ600148
genomic: TCAGAGTATTTGAAAGGCAAATTGGGTCGAATAAATACTTGgtatggcttg ... gatctgacag-
EST: TTANNNNNNNCAGAGTATTTGAAAGGCAAATTGGGTCGAATAAATACTTG TTTTTTGTGTTATTTTCAACAATAATCTCGACAACCCTTGAAGTGATCGCA
genomic: TTA-TTTTTTCAGAGTATTTGAAAGGCAAATTGGGTCGAATAAATACTTGgtatggcttg ... gatctgacagTTTTTTGTGTTATTTTCAACAATAATCTCGACAACCCTTGAAGTGATCGCA
tgttctgatccctgtcctttccttacgaactaaccaaagcaagtggatctgacagTTTTTTGTGTTATTTTCAACAATAATCTCGACAACCCTTGAAGTGATCGCACTGGCTGCCTTACAAG
aactaac putative branch site (score: 1)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggcttgttcttctcatcttgcattcctccacctttcgtggataggatgatatactaatgctgacttgctgacagagtgttaatgtatatagtgcgaactgttctgatccctgtcctttccttacgaactaaccaaagcaagtggatctgacagTTTTTTGTGTTATTTTCAACAATAATCTCGACAACCCTTGAAGTGATCGCACTGGCTGCCTTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG