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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgccatgttgcgtttctcaacctgtttgtacggtagtctatgttacttatatataattttgttcggaggctgttatgcagggacagcaggatcttgtctagagtatgatgcatcaatcttgtgggcctttccgcctttttagtgtgattatatgctctgggatgataacttgatctttgggaccttgcagATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACTTTAGGCATCAAAAATGACGATGGGGTTGTTGTATATGACTCCAAAGGCA

Basic information

species Physcomitrella patens
transcript PP1S78_4V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67716660|gb|BJ966920.1|BJ966920
EST:     CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGAC                         ATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
genomic: CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGACgtaagtgcca ... gaccttgcagATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
EST: gi|162268669|gb|FC445166.1|FC445166
EST:     CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGAC                         ATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
genomic: CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGACgtaagtgcca ... gaccttgcagATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
EST: gi|67571995|gb|BJ944819.1|BJ944819
EST:     CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGAC                         ATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
genomic: CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGACgtaagtgcca ... gaccttgcagATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
EST: gi|100360013|gb|BY965985.1|BY965985
EST:     CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGAC                         ATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCG
genomic: CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGACgtaagtgcca ... gaccttgcagATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCG
EST: gi|100399488|gb|BY972744.1|BY972744
EST:     TGGAGCAGTTTTCTTTGACCTCGGACA-GATTTCCGATGTAACATCAGAC                         ATGCCTCATATGCTGCCATCGGAAGCTGCATTCGAGCAAGCG
genomic: TGGAGCAGTTTTCTTTGACCTCG-ACAAGATTTCCGATGTAACATCAGACgtaagtgcca ... gaccttgcagATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCG
EST: gi|100418022|gb|BY993298.1|BY993298
EST:     CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGAC                         ATGCCTCATATGCTGCCACCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
genomic: CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGACgtaagtgcca ... gaccttgcagATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
EST: gi|100412842|gb|BY992463.1|BY992463
EST:     CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGAC                         ATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
genomic: CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGACgtaagtgcca ... gaccttgcagATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
EST: gi|100396273|gb|BY990048.1|BY990048
EST:     CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGAC                         ATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
genomic: CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGACgtaagtgcca ... gaccttgcagATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
EST: gi|208376166|gb|DC906797.1|DC906797
EST:     CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGAC                         ATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
genomic: CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGACgtaagtgcca ... gaccttgcagATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
EST: gi|67716419|gb|BJ966679.1|BJ966679
EST:     CTGGAGCAGTTTTCTTTGACCTCGACNAGATTTCCGATGTAACATCAGAC                         ATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
genomic: CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGACgtaagtgcca ... gaccttgcagATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
EST: gi|208360175|gb|DC939186.1|DC939186
EST:     CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGAC                         ATGCCCCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
genomic: CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGACgtaagtgcca ... gaccttgcagATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
EST: gi|100411082|gb|BY956316.1|BY956316
EST:     TTGGAGCAGTTTTCTGTGACTTCGACAAGATTTCCGATGTAACATCAGAC                         ATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACC
genomic: T-GGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGACgtaagtgcca ... gaccttgcagATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
EST: gi|162182755|gb|FC359502.1|FC359502
EST:     CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGAC                         ATGCCTCATATGCTGCCATCTGAAGCTGCATTCGAGCAAGCGGCTTCTACT
genomic: CTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGATGTAACATCAGACgtaagtgcca ... gaccttgcagATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACT
EST: gi|67572332|gb|BJ945156.1|BJ945156
EST:     AGATTTCCGATGTAACATCAGAC                         ATGCCTCATATGCTGCCATCCTTAAGCTGCATTCGAGCAAGCGGCTTCTAC
genomic: AGATTTCCGATGTAACATCAGACgtaagtgcca ... gaccttgcagATGCCTCATATGCTGCCATCC-GAAGCTGCATTCGAGCAAGCGGCTTCTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttagtgtgattatatgctctgggatgataacttgatctttgggaccttgcagATGCCTCATATGCTGCCATCCGAAGCTGCATTCGAGCAAGCGGCTTCTACTTTAGGCATCAAAAATGACGATGGGGTTGTTGTATATGACTCCAAAGGCA
         tgattatat  TA-rich tract