1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tggtaaggtacttattgtcctggtagggtctcagttgagttttgttgacgtgtggatcaaaccttttttttttttttttttttttttttgactatttcagGTTCTGGAGTTTGTACACTTCGCATGCACATCAGAGGACATCAATAACCTTTCTCATGCTTTGATGCTAAGATCAGCTATGGACTCGGTGGTGTTGCCTA
species | Physcomitrella patens |
transcript | PP1S78_3V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGAGTATGTGCTTAAAGACAAGATCCGTTCTGACGCTGAGCTTTCGAAA GTTCTGGAGTTTGTACACTTCGCATGCACATCAGAGGACATCAATAACCTTEST: gi|162167459|gb|FC343669.1|FC343669
genomic: TCGAGTATGTGCTTAAAGACAAGATCCGTTCTGACGCTGAGCTTTCGAAAgttcgttccc ... actatttcagGTTCTGGAGTTTGTACACTTCGCATGCACATCAGAGGACATCAATAACCTT
EST: TCGAGTATGTGCTTAAAGACAAGATCCGTTCTGACGCTGAGCTTTCGAAA GTTCTGGAGTTTGTACACTTCGCATGCACATCAGAGGACATCAATAACCTT
genomic: TCGAGTATGTGCTTAAAGACAAGATCCGTTCTGACGCTGAGCTTTCGAAAgttcgttccc ... actatttcagGTTCTGGAGTTTGTACACTTCGCATGCACATCAGAGGACATCAATAACCTT
tgacgtgtggatcaaaccttttttttttttttttttttttttttgactatttcagGTTCTGGAGTTTGTACACTTCGCATGCACATCAGAGGACATCAATAACCTTTCTCATGCTTTGATGCTAAGATCAGCTATGGACTCGGTGGTGTTGCCTA
ttttgac putative branch site (score: 3)
cctttttttttttttt CT-rich tract
aaaccttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtaaggtacttattgtcctggtagggtctcagttgagttttgttgacgtgtggatcaaaccttttttttttttttttttttttttttgactatttcagGTTCTGGAGTTTGTACACTTCGCATGCACATCAGAGGACATCAATAACCTTTCTCATGCTTTGATGCTAAGATCAGCTATGGACTCGGTGGTGTTGCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT