1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtaaaacaggaactaatgaatgagtaatgtcttattttatgatctgagtgtgtagtattaactgacattcgggtaatgttctttgatctgttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATCAGCCAAAAGAACTTGGACATAGAAGAAGCTTGTTTGAAATTGGAAGCCG
species | Physcomitrella patens |
transcript | PP1S78_33V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATCEST: gi|6167188|gb|AW145452.1|AW145452
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
EST: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG CAAGCTGGGGCGGTTGAATTGAACTTGTNTGAGTTCCCAATGGAAAGAAATEST: gi|162240059|gb|FC418823.1|FC418823
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGT-TGAGTTCCCAATGGAAAGAAAT
EST: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATCEST: gi|162240058|gb|FC418822.1|FC418822
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
EST: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATCEST: gi|37821556|gb|BJ579622.1|BJ579622
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
EST: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATCEST: gi|208381716|gb|DC928379.1|DC928379
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
EST: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATCEST: gi|18334929|gb|BJ166947.1|BJ166947
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
EST: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATCEST: gi|162256323|gb|FC432333.1|FC432333
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
EST: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATCEST: gi|15728433|gb|BI740785.1|BI740785
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
EST: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATCEST: gi|7287371|gb|AW599858.1|AW599858
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
EST: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAG CAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
genomic: AATATCAGCGTGAGATTGAGATATTGAATCGAGAGCGCAAGCTTAATCAGgtcaccactg ... ttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATC
gagtgtgtagtattaactgacattcgggtaatgttctttgatctgttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATCAGCCAAAAGAACTTGGACATAGAAGAAGCTTGTTTGAAATTGGAAGCCG
tctgttc CT-rich tract
tagtattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaacaggaactaatgaatgagtaatgtcttattttatgatctgagtgtgtagtattaactgacattcgggtaatgttctttgatctgttcgtcacagCAAGCTGCGGCGGTTGAATTGAACTTGTTGAGTTCCCAATGGAAAGAAATCAGCCAAAAGAACTTGGACATAGAAGAAGCTTGTTTGAAATTGGAAGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG