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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccttcgaacatatccttttcaactatgtgataagctatctacgtcaattttctggacatctaacgttaaattcttaaaaactgctacctgatggtgttttactcctttctcttgagctggatacatgtatatgaagtcgtgactaaataattataacccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAAAGAAGCCAACTGATAAATACATTCAGGTGGTGACGACAGATGGACATG

Basic information

species Physcomitrella patens
transcript PP1S78_27V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100360331|gb|BY966118.1|BY966118
EST:     AGTTGACGTACTATCCCACCCCTGGGCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATG
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATG
EST: gi|208397353|gb|DC908243.1|DC908243
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|162258232|gb|FC434631.1|FC434631
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|162272037|gb|FC448455.1|FC448455
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100402336|gb|BY954785.1|BY954785
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GGTATCGTACCATTAGAGAATGTAAGGGAGGGTATATCAAGT-GCGAACGC
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCA-GTTGCGAACGC
EST: gi|100446423|gb|CJ970722.1|CJ970722
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100361733|gb|BY947795.1|BY947795
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACNAG                         GTTATCGTACCATTTAGAGA-TGTAAGGGAGGTTATATCAGTTGCGAACGC
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATT-AGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGC
EST: gi|100379442|gb|BY986639.1|BY986639
EST:     GTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTTACA-G                         GTTATCGTACCATTAGAG
genomic: GTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATT-ACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAG
EST: gi|162271808|gb|FC448941.1|FC448941
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|162251814|gb|FC427546.1|FC427546
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208376014|gb|DC914439.1|DC914439
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTANAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100391313|gb|BY971594.1|BY971594
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGANGA-TGTAAGGGAAGGTT
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGA-GAATGTAAGGGA-GGTT
EST: gi|37842263|gb|BJ600271.1|BJ600271
EST:     TTGACGTACTATCCCCACCCCTGGCCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: TTGACGTACTAT-CCCACCCCTGG-CCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100441789|gb|BY962880.1|BY962880
EST:     GTTGACGTACTATCCCACCCCTGGCCAGGGCGGC-TCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGT
genomic: GTTGACGTACTATCCCACCCCTGGCCAGG-CGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGT
EST: gi|100369212|gb|BY985066.1|BY985066
EST:     GTTGACGTACTATCCCACCCCTGGCCAGGGCG-CCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATG
genomic: GTTGACGTACTATCCCACCCCTGGCCAGG-CGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATG
EST: gi|100442833|gb|BY963328.1|BY963328
EST:     AGTTGACGTACTATCCCACCCCTGGGCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGANGA-TGTAAGGGAGGT
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGA-GAATGTAAGGGAGGT
EST: gi|162242692|gb|FC416383.1|FC416383
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100441712|gb|BY962803.1|BY962803
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAAATGTA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAA-TGTA
EST: gi|208374673|gb|DC948645.1|DC948645
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208382718|gb|DC928479.1|DC928479
EST:     CTCCAGTTA-TAC-AN                         GNTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGNTGCGAACGCA
genomic: CTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|162258231|gb|FC434630.1|FC434630
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100407309|gb|BY991637.1|BY991637
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100376555|gb|BY986223.1|BY986223
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAG
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAG
EST: gi|100422743|gb|BY957978.1|BY957978
EST:     GTTGACGTACTANTCC-ACCCCTGGCCAGGCGGGCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAA
genomic: GTTGACGTACTA-TCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAA
EST: gi|208350182|gb|DC901580.1|DC901580
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTANAGAATGTAAGGGAGGTTATATCANTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100425877|gb|BY977165.1|BY977165
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACA-G                         GTTATCGTACCATTAGAGAATGTA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTA
EST: gi|100444653|gb|BY982482.1|BY982482
EST:     AGTTGACGTACTATTCCACCCCTGGCCAGGCNGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAG
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAG
EST: gi|100422244|gb|BY957928.1|BY957928
EST:     GTTGACGTACTATCCCACCCCCTGGC-AGGCGGCCTCCAGTTATTACA-G                         GTTATCGTACCATT
genomic: GTTGACGTACTATCCCACCCC-TGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATT
EST: gi|67694428|gb|BJ954661.1|BJ954661
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100355782|gb|BY965143.1|BY965143
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATG
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATG
EST: gi|208385225|gb|DC923591.1|DC923591
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGACGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208355239|gb|DC949789.1|DC949789
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|162271809|gb|FC448942.1|FC448942
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208379712|gb|DC907597.1|DC907597
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208352107|gb|DC901670.1|DC901670
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100353968|gb|BY983401.1|BY983401
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GGTATCGTACCATTAGAGAATGT
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGT
EST: gi|208374197|gb|DC945243.1|DC945243
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208357881|gb|DC902363.1|DC902363
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208353654|gb|DC922128.1|DC922128
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208384413|gb|DC928164.1|DC928164
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208362981|gb|DC946892.1|DC946892
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|37828136|gb|BJ586148.1|BJ586148
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100393931|gb|BY953554.1|BY953554
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|37825984|gb|BJ584050.1|BJ584050
EST:     GGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: GGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208352534|gb|DC918243.1|DC918243
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTANCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|162272036|gb|FC448454.1|FC448454
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208393630|gb|DC904346.1|DC904346
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGANCGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208381635|gb|DC915501.1|DC915501
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100388982|gb|BY952186.1|BY952186
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GGTATCGTACCATTAGAGAA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAA
EST: gi|208346585|gb|DC916851.1|DC916851
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|37852720|gb|BJ610728.1|BJ610728
EST:     CCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: CCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100385932|gb|BY951126.1|BY951126
EST:     AGTTGACGTACTATCCCACCCCTGGC-AGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGA
EST: gi|208350120|gb|DC921487.1|DC921487
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208358367|gb|DC930724.1|DC930724
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGANTGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208377233|gb|DC932383.1|DC932383
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTA
EST: gi|100362157|gb|BY947218.1|BY947218
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAAACGC
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAA-CGC
EST: gi|100429873|gb|BY978131.1|BY978131
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACNAG                         GTTATCGTACCATTAGAGAAATGTA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAA-TGTA
EST: gi|37835053|gb|BJ593065.1|BJ593065
EST:     CTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: CTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208378755|gb|DC914729.1|DC914729
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|37844181|gb|BJ602189.1|BJ602189
EST:     CCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: CCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|67726088|gb|BJ976347.1|BJ976347
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100359043|gb|BY965650.1|BY965650
EST:     GTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTTACA-G                         GTTATCGTACCAT
genomic: GTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATT-ACAAGgtaccttcga ... ccatccgcagGTTATCGTACCAT
EST: gi|208384438|gb|DC928189.1|DC928189
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100389420|gb|BY988898.1|BY988898
EST:     GTTGACGTACTATCCCACCCCTGGGCCAGGCGGCCTCCAGTTATTACNAG                         GTTATCGTACCATTAGAGGATGTA
genomic: GTTGACGTACTATCCCACCCCTGG-CCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTA
EST: gi|18338051|gb|BJ170075.1|BJ170075
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208367195|gb|DC935981.1|DC935981
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGANCGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|37828148|gb|BJ586160.1|BJ586160
EST:     TTGACGTACTATCCCCACCCCTGGCCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: TTGACGTACTAT-CCCACCCCTGG-CCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100443786|gb|BY963883.1|BY963883
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATT
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATT
EST: gi|208394206|gb|DC933874.1|DC933874
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGANCGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|37828990|gb|BJ587002.1|BJ587002
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|100365332|gb|BY966926.1|BY966926
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGA
EST: gi|162242693|gb|FC416384.1|FC416384
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
EST: gi|208372211|gb|DC948014.1|DC948014
EST:     AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAG                         GTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA
genomic: AGTTGACGTACTATCCCACCCCTGGCCAGGCGGCCTCCAGTTATTACAAGgtaccttcga ... ccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagctggatacatgtatatgaagtcgtgactaaataattataacccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAAAGAAGCCAACTGATAAATACATTCAGGTGGTGACGACAGATGGACATG
                                      ttataac  putative branch site (score: 2)
                                            cccatcc  CT-rich tract
                           tgactaaataattata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaccttcgaacatatccttttcaactatgtgataagctatctacgtcaattttctggacatctaacgttaaattcttaaaaactgctacctgatggtgttttactcctttctcttgagctggatacatgtatatgaagtcgtgactaaataattataacccatccgcagGTTATCGTACCATTAGAGAATGTAAGGGAGGTTATATCAGTTGCGAACGCAAAGAAGCCAACTGATAAATACATTCAGGTGGTGACGACAGATGGACATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA