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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaatgatattatcgggcccactgcttaactcattgtcatatcactatgtaatgaaagtttcatttaacactcctctgaatcacgatgtttactctccagGGTAATATTGAGGAGCTAATCCAGATTGATCTCGGAAATAGGGCAGCTGCTGCAGTAGAAGACTGTTCTCAAACGTTTGAGACTTACTTTGATTTTAACG

Basic information

species Physcomitrella patens
transcript PP1S78_207V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162246590|gb|FC422492.1|FC422492
EST:     TCAAAGATGTTGGTAGATTTATCTACCTCGATGCTGACATAGTGGTGAAG                         GGTAATATTGAGGAGCTAATCCAGATTGATCTCGGANATAGGGCAGCTGCT
genomic: TCAAAGATGTTGGTAGATTTATCTACCTCGATGCTGACATAGTGGTGAAGgtatccgcga ... tactctccagGGTAATATTGAGGAGCTAATCCAGATTGATCTCGGAAATAGGGCAGCTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtaatgaaagtttcatttaacactcctctgaatcacgatgtttactctccagGGTAATATTGAGGAGCTAATCCAGATTGATCTCGGAAATAGGGCAGCTGCTGCAGTAGAAGACTGTTCTCAAACGTTTGAGACTTACTTTGATTTTAACG
                 atttaac  putative branch site (score: 3)
                                           tttactctcc  putative PPT
         aaagtttcatttaa  TA-rich tract