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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacatcagttagtcaaactttgtgtgcccatgacggtcacagctgaagaaggattgattgtagggggtgaaagtcatgattgagtagtaatcggatcttgaaactggatgtgcttttagGTTCGTACCGGAGAAGTTTGAGGAACTGTTCAGTAAATTTTCCAAGACTGACAGATCTCGGCTACGTTATGATGAACTGTATTCACTAACAAGCGCGAAC

Basic information

species Physcomitrella patens
transcript PP1S77_124V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208373463|gb|DC931894.1|DC931894
EST:     CACAAAGCCAAGCATGGGAGTGACTCTGAAGTGTATGACACAGAGGGCAG                         GTTCGTACCGGAGAAGTTTGAGGAACTGTTCAGTAAATTTTCCAAGACTGA
genomic: CACAAAGCCAAGCATGGGAGTGACTCTGAAGTGTATGACACAGAGGGCAGgtaaacatca ... gtgcttttagGTTCGTACCGGAGAAGTTTGAGGAACTGTTCAGTAAATTTTCCAAGACTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggtgaaagtcatgattgagtagtaatcggatcttgaaactggatgtgcttttagGTTCGTACCGGAGAAGTTTGAGGAACTGTTCAGTAAATTTTCCAAGACTGACAGATCTCGGCTACGTTATGATGAACTGTATTCACTAACAAGCGCGAAC
                                              tgctttt  CT-rich tract
                    tagtaat  TA-rich tract