1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttggttgattttctgtgctcttttcgtcattatcacatgtttgaattcccttttaaccgttctgtgatgtgtgttaatgtttagaggctatgaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT
species | Physcomitrella patens |
transcript | PP1S76_8V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|100412613|gb|BY974821.1|BY974821
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|162249661|gb|FC426801.1|FC426801
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGATCTTCCGCAGTCTCTTTEST: gi|100393326|gb|BY989824.1|BY989824
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|100375234|gb|BY948810.1|BY948810
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|100396545|gb|BY990178.1|BY990178
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|100432068|gb|BY978649.1|BY978649
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|100360599|gb|BY984199.1|BY984199
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: GAAGGAGTGGCGTACTACAATAACCTTATAAATGGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGGACCTTCCGCAGTCTCTTEST: gi|67716232|gb|BJ966492.1|BJ966492
genomic: GAAGGAGTGGCGTACTACAATAACCTTATAAATGG-TCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGG-ACCTTCCGCAGTCTCTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|208383670|gb|DC907061.1|DC907061
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|100362831|gb|BY947550.1|BY947550
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|18329187|gb|BJ161193.1|BJ161193
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTCCCGCAGTCTCTTTEST: gi|100391024|gb|BY953034.1|BY953034
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|162183972|gb|FC359342.1|FC359342
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGATCTTCCGCAGTCTCTTTEST: gi|100387996|gb|BY988469.1|BY988469
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|162154400|gb|FC330207.1|FC330207
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGATCTTCCGCAGTCTCTTTEST: gi|100445704|gb|CJ970003.1|CJ970003
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|162258357|gb|FC434284.1|FC434284
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|100358802|gb|BY946698.1|BY946698
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|162157552|gb|FC333810.1|FC333810
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGATCTTCCGCAGTCTCTTTEST: gi|100437296|gb|BY961449.1|BY961449
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|100452031|gb|CJ975065.1|CJ975065
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|67719020|gb|BJ969279.1|BJ969279
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|100376261|gb|BY986100.1|BY986100
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|208380336|gb|DC907661.1|DC907661
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|100417188|gb|BY957211.1|BY957211
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|67704515|gb|BJ964748.1|BJ964748
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|67718927|gb|BJ969186.1|BJ969186
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|100418352|gb|BY957377.1|BY957377
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTEST: gi|100365284|gb|BY966902.1|BY966902
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
EST: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAG GTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
genomic: AGAAGGAGTGGCGTACTACAATAACCTTATAAATGGTCTTTTGAAAAAAGgtttggttga ... gaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTT
tcccttttaaccgttctgtgatgtgtgttaatgtttagaggctatgaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT
ttaatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggttgattttctgtgctcttttcgtcattatcacatgtttgaattcccttttaaccgttctgtgatgtgtgttaatgtttagaggctatgaatgtgcagGTATCCAACCATACGTGACACTTTATCACTGGGACCTTCCGCAGTCTCTTTATGATTCATATCGCGGCTGGATTGACCGCAGAGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA