1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attggttggcatggattaccgcagtgtgtcttaggccctcagaacaaatgtgttcctaaggatataagttaaatggtggggatgtgtgaactttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATGCTTGCTGAAGATGCTATCAAAGCGGCGGTGAAGGACTACAAGTCCAAG
species | Physcomitrella patens |
transcript | PP1S76_212V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|18332989|gb|BJ165003.1|BJ165003
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: CAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|162224580|gb|FC400476.1|FC400476
genomic: CAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|18348082|gb|BJ180129.1|BJ180129
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|67508569|gb|BJ941432.1|BJ941432
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|18345107|gb|BJ177148.1|BJ177148
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|37827453|gb|BJ585465.1|BJ585465
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|162250386|gb|FC426248.1|FC426248
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|37824297|gb|BJ582363.1|BJ582363
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|162250385|gb|FC426247.1|FC426247
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|162177237|gb|FC353394.1|FC353394
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|67691788|gb|BJ952021.1|BJ952021
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|208372787|gb|DC952674.1|DC952674
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: AGTGGATCAAGGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|162224579|gb|FC400475.1|FC400475
genomic: AGTGGATCAA-GGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATEST: gi|162177238|gb|FC353395.1|FC353395
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
EST: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAG TGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
genomic: GAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGAACAGgtaaataagc ... ctttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCAT
aaatgtgttcctaaggatataagttaaatggtggggatgtgtgaactttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATGCTTGCTGAAGATGCTATCAAAGCGGCGGTGAAGGACTACAAGTCCAAG
ctttctgc CT-rich tract
atataagttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attggttggcatggattaccgcagtgtgtcttaggccctcagaacaaatgtgttcctaaggatataagttaaatggtggggatgtgtgaactttctgcagTGACATCGCCAAGCACCTATCTCTGCCACCTGTGAAGTTGCACTGCAGCATGCTTGCTGAAGATGCTATCAAAGCGGCGGTGAAGGACTACAAGTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG